View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2441_low_20 (Length: 376)

Name: NF2441_low_20
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2441_low_20
NF2441_low_20
[»] chr3 (4 HSPs)
chr3 (1-366)||(33840696-33841062)
chr3 (36-366)||(30287784-30288116)
chr3 (293-363)||(47344476-47344546)
chr3 (293-363)||(3798991-3799061)
[»] chr8 (1 HSPs)
chr8 (36-366)||(33174623-33174954)
[»] chr4 (2 HSPs)
chr4 (36-366)||(53897283-53897615)
chr4 (35-366)||(42077856-42078188)
[»] chr1 (3 HSPs)
chr1 (36-366)||(11701128-11701461)
chr1 (1-366)||(36858568-36858942)
chr1 (288-366)||(10221339-10221417)
[»] chr7 (1 HSPs)
chr7 (36-366)||(18665404-18665727)
[»] chr2 (3 HSPs)
chr2 (81-366)||(4424564-4424849)
chr2 (1-183)||(37202899-37203083)
chr2 (168-223)||(37203097-37203152)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 33841062 - 33840696
Alignment:
Q  1 taagcggcggctgttaacgaccgctggtttaaatagtagttaactaccgtttatattgatgagagagaaaagtatttgcactgcaattcactttctttat 100  Q
    |||||||||||||||||| |||||||| | |||  |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  33841062 taagcggcggctgttaacaaccgctggctcaaacggtagttaactaccgttcatattgatgagagagaaaagtatttacactgcaattcactttcttcat 33840963  T
Q  101 tcttgtgggtttgattcttcacacttgttgttgttgctgctcttttttaggaacaagtatgagtttcaatcacataaaacaaatacaaataaattgaatc 200  Q
    ||||||||||||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33840962 tcttgtgggtttgattcttcacactttctgttgttgttgctcttttttaggaacaagaatgagtttcaatcacataaaacaaatacaaataaattgaatc 33840863  T
Q  201 aatgtcaacacaacctgaaccca-nnnnnnnctttatctttgtcttccaccgacattttacaatcaaaaatggtgaattggnnnnnnngtgtcttatgct 299  Q
    |||||||||||| ||||||||||        |||||| ||| ||||||||  |||||||||||| ||||||||||||||||       |||||||||| |    
T  33840862 aatgtcaacacagcctgaacccattttttttctttatgtttttcttccacttacattttacaataaaaaatggtgaattggtttttttgtgtcttatgtt 33840763  T
Q  300 tttctattcaaaattaataatttaagaacataaatcaatcctaataaaatccaattgttaattcttc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33840762 tttctattcaaaattaataatttaagaacataaatcaatcctaataaaatccaattgttaattcttc 33840696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 36 - 366
Target Start/End: Complemental strand, 30288116 - 30287784
Alignment:
Q  36 gtagttaactaccgtttatattgatgagagagaaaagtatttgcactgcaattcactttctttattcttgtgggtttgattcttcacacttgttgttgtt 135  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||    
T  30288116 gtagttaactaccgttcatattgatgagagagaaaagtatctgcactgcaattcactttcttcattcctgtgggtttgattcttcacacttgctgttgtt 30288017  T
Q  136 gctgctcttttttaggaacaagtatgagtttcaatcacataaaacaaatacaaataaattgaatcaatgtcaacacaacctgaaccca-nnnnnnncttt 234  Q
    | |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |         |||    
T  30288016 gttgctcttttttaggaacaagaatgggtttcaatcacataaaacaaatacaaataaattgaatcaatgtcaacaaaaccttaacctatttttttttttt 30287917  T
Q  235 atctttgtcttccaccgacattttacaatcaaaaatggtgaattg-gnnnnnnngtgtcttatgcttttctattcaaaattaataatttaagaacataaa 333  Q
     | ||| |||||||  |||||||||||| ||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||    
T  30287916 ctgtttttcttccattgacattttacaaccaaaaatggtgaattgattttttttgtgtcttatgcttttctattcaaaattaataatttaagaacataaa 30287817  T
Q  334 tcaatcctaataaaatccaattgttaattcttc 366  Q
    | |||||||||||||||||||||||||||||||    
T  30287816 ttaatcctaataaaatccaattgttaattcttc 30287784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 363
Target Start/End: Complemental strand, 47344546 - 47344476
Alignment:
Q  293 ttatgcttttctattcaaaattaataatttaagaacataaatcaatcctaataaaatccaattgttaattc 363  Q
    |||||||||||||||||||||||||| ||||| |  | |||||||||||  ||||| ||| ||||||||||    
T  47344546 ttatgcttttctattcaaaattaatattttaaaagaaaaaatcaatcctgctaaaacccagttgttaattc 47344476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 363
Target Start/End: Original strand, 3798991 - 3799061
Alignment:
Q  293 ttatgcttttctattcaaaattaataatttaagaacataaatcaatcctaataaaatccaattgttaattc 363  Q
    ||||| |||||||||||||||||||| ||||| |  | |||||||||||  ||||| ||| ||||||||||    
T  3798991 ttatgtttttctattcaaaattaatattttaaaagaaaaaatcaatcctgctaaaacccagttgttaattc 3799061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 36 - 366
Target Start/End: Original strand, 33174623 - 33174954
Alignment:
Q  36 gtagttaactaccgtttatattgatgagagagaaaagtatttgcactgcaattcactttctttattcttgtgggtttgattcttcacacttgttgttgtt 135  Q
    |||||||||||||| | ||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  33174623 gtagttaactaccgctcatattgatgagagagaaaagtatatgcagtgcaattcactttcttcattcttgtgggtttgattcttcacacttgctgttgtt 33174722  T
Q  136 gctgctcttttttaggaacaagtatgagtttcaatcacataaaacaaatacaaataaattgaatcaatgtcaacacaacctgaaccca-nnnnnnncttt 234  Q
    | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||        ||||    
T  33174723 gttgctcttttttaggaacaagaatgagtttcaatcacataaaacaaatacaaataaattgaattaatgtcaacaaaacctgaacccattttttttcttt 33174822  T
Q  235 atctttgtcttccaccgacattttacaatcaaaaatggtgaattggnnnnnnngtgtcttatgcttttctattcaaaattaataatttaagaacataaat 334  Q
     | ||| ||||||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  33174823 ctgtttttcttccaccgacattttacaaccaaaaatggtgaattggtttttttgtgtcttatgcttttctattcaaaattaataatttaagaacataaat 33174922  T
Q  335 caatcctaataaaatccaattgttaattcttc 366  Q
    ||||||||||||||||||||||||||||||||    
T  33174923 caatcctaataaaatccaattgttaattcttc 33174954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 36 - 366
Target Start/End: Complemental strand, 53897615 - 53897283
Alignment:
Q  36 gtagttaactaccgtttatattgatgagagagaaaagtatttgcactgcaattcactttctttattcttgtgggtttgattcttcacacttgttgttgtt 135  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  53897615 gtagttaactaccgttcatattgatgagagagaaaagtatctgcactgcaattcactttcttcattcttgtgggtttgattcttcacacttgctgttgtt 53897516  T
Q  136 gctgctcttttttaggaacaagtatgagtttcaatcacataaaacaaatacaaataaattgaatcaatgtcaacacaacctgaaccca-nnnnnnncttt 234  Q
    | |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||        ||||    
T  53897515 gttgctcttttttaggaacaagaatgagattcgatcacataaaacaaatacaaataaattgaatcaatgtcaacaaaacctgaacccattttttttcttt 53897416  T
Q  235 atctttgtcttccaccgacattttacaatcaaaaatggtgaattgg-nnnnnnngtgtcttatgcttttctattcaaaattaataatttaagaacataaa 333  Q
     | ||| |||||||| |||||||||||| |||||||||||||||||        |||||||||||||||||||||| ||||||||||||||||||||| |    
T  53897415 ctatttttcttccactgacattttacaaccaaaaatggtgaattggttttttttgtgtcttatgcttttctattcagaattaataatttaagaacataca 53897316  T
Q  334 tcaatcctaataaaatccaattgttaattcttc 366  Q
    ||||| |||||||||||||||||||||||||||    
T  53897315 tcaattctaataaaatccaattgttaattcttc 53897283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 35 - 366
Target Start/End: Original strand, 42077856 - 42078188
Alignment:
Q  35 agtagttaactaccgtttatattgatgagagagaaaagtatttgcactgcaattcactttctttattcttgtgggtttgattcttcacacttgttgttgt 134  Q
    |||||||||||||| || ||||||||||||||| ||||||| |||||||||||||||||| || |||||||||||||||||| |||||||||| ||||||    
T  42077856 agtagttaactacctttcatattgatgagagaggaaagtatctgcactgcaattcactttgttcattcttgtgggtttgattgttcacacttgctgttgt 42077955  T
Q  135 tgctgctcttttttaggaacaagtatgagtttcaatcacataaaacaaatacaaataaattgaatcaatgtcaacacaacctgaaccca-nnnnnnnctt 233  Q
    || |||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||        |||    
T  42077956 tgttgctcttttttaggaacaagaatgggtttcaatcacataaaataaatacaaataaattgaatcaatgtcaacaaaacttgaacccattttttttctt 42078055  T
Q  234 tatctttgtcttccaccgacattttacaatcaaaaatggtgaattggnnnnnnngtgtcttatgcttttctattcaaaattaataatttaagaacataaa 333  Q
    | | ||| |||||||| |||||||||||| |||||||||||||||||       ||||||||||| ||||||||||| ||||||||||||||||||||||    
T  42078056 tctgtttttcttccactgacattttacaaccaaaaatggtgaattggtttttttgtgtcttatgcatttctattcaatattaataatttaagaacataaa 42078155  T
Q  334 tcaatcctaataaaatccaattgttaattcttc 366  Q
    |||||||||||||||||||||||||||||||||    
T  42078156 tcaatcctaataaaatccaattgttaattcttc 42078188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 36 - 366
Target Start/End: Original strand, 11701128 - 11701461
Alignment:
Q  36 gtagttaactaccgtttatattgatgagagagaaaagtatttgcactgcaattcactttctttattcttgtgggtttgattcttcacacttgttgttgtt 135  Q
    |||||||||||||||| ||||||||||||||||||||||| | || ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  11701128 gtagttaactaccgttcatattgatgagagagaaaagtatctacagtgcaatttactttcttcattcttgtgggtttgattcttcacacttgttgctgtt 11701227  T
Q  136 gctgctcttttttaggaacaagtatgagtttcaatcacataaaacaaatacaaataaattgaatcaatgtcaacacaacctgaaccca-nnnnnnncttt 234  Q
    | ||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        ||||    
T  11701228 gttgctcttgtttaggaacaagaatgggtttcaatcacataaaacaaatacaaataaattgaatcaatgtcaacaaaacctgaacccattttttttcttt 11701327  T
Q  235 atctttgtcttccaccgacattttacaatcaaaaatggtgaattgg-nnnnnnngtgtcttatgcttttctattcaaaattaataatttaagaacat-aa 332  Q
     | ||| |||||| | |||||||||||| |||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||| ||    
T  11701328 ctgtttttcttcctctgacattttacaaccaaaaatggtgaattggttttttttgtgtcttatgcttttctattcaaaattaataatttaagaacataaa 11701427  T
Q  333 atcaatcctaataaaatccaattgttaattcttc 366  Q
    ||||||||||||||||||||||||||||||||||    
T  11701428 atcaatcctaataaaatccaattgttaattcttc 11701461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 36858568 - 36858942
Alignment:
Q  1 taagcggcggctgttaacgaccgctggtttaaatagtagttaactaccgtttatattgatgagagagaaa--------agtatttgcactgcaattcact 92  Q
    |||||||||||||||||| ||| |||| || |   |||||||||||||||| |||||||||||||||| |        ||||| |||||| |||||||||    
T  36858568 taagcggcggctgttaacaaccactggcttcagcggtagttaactaccgttcatattgatgagagagagagagagagaagtatctgcactccaattcact 36858667  T
Q  93 ttctttattcttgtgggtttgattcttcacacttgttgttgttgctgctcttttttaggaacaagtatgagtttcaatcacataaaacaaatacaaataa 192  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||    
T  36858668 ttcttcatttttgtgggtttgattcttcacacttgttgttgttgttgctcttttttaggaacaagaatgggtttcaaccacatcaaacaaatacaaataa 36858767  T
Q  193 attgaatcaatgtcaacacaacctgaaccca-nnnnnnnctttatctttgtcttccaccgacattttacaatcaaaaatggtgaattggnnnnnnngtgt 291  Q
    ||||||||||| |||||| ||||||||||||        |||| | ||| ||||||||||||||||||||| ||||||||||||||||        ||||    
T  36858768 attgaatcaatatcaacaaaacctgaacccattttttttctttctgtttttcttccaccgacattttacaaccaaaaatggtgaattgatttttttgtgt 36858867  T
Q  292 cttatgcttttctattcaaaattaataatttaagaacataaatcaatcctaataaaatccaattgttaattcttc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36858868 cttatgcttttctattcaaaattaataatttaagaacataaatcaatcctaataaaatccaattgttaattcttc 36858942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 288 - 366
Target Start/End: Complemental strand, 10221417 - 10221339
Alignment:
Q  288 gtgtcttatgcttttctattcaaaattaataatttaagaacataaatcaatcctaataaaatccaattgttaattcttc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10221417 gtgtcttatgcttttctattcaaaattaataatttaagaacataaatcaatcctaataaaatccaattgttaattcttc 10221339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 36 - 366
Target Start/End: Original strand, 18665404 - 18665727
Alignment:
Q  36 gtagttaactaccgtttatattgatgagagagaaaagtatttgcactgcaattcactttctttattcttgtgggtttgattcttcacacttgttgttgtt 135  Q
    |||||||||||  ||| ||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18665404 gtagttaactattgttcatattgatgagagagaaaagtatctgcactacaattcactttcttcattcttgtgggtttgattcttcacacttgttgttgtt 18665503  T
Q  136 gctgctcttttttaggaacaagtatgagtttcaatcacataaaacaaatacaaataaattgaatcaatgtcaacacaacctgaacccannnnnnncttta 235  Q
    | |||||||||||||||| ||| |||||||||||||       |||||||||||||||||||||||||||||||| |||||||||||         ||||    
T  18665504 gttgctcttttttaggaataagaatgagtttcaatc-------acaaatacaaataaattgaatcaatgtcaacaaaacctgaaccctttttttttttta 18665596  T
Q  236 tctttgtcttccaccgacattttacaatcaaaaatggtgaattggnnnnnnngtgtcttatgcttttctattcaaaattaataatttaagaacataaatc 335  Q
    | ||| |||||||| |||||||||  | |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18665597 tgtttttcttccactgacattttattaccaaaaatggtgaattggtttttttgtgtcttatgcttttctattcaaaattaataatttaagaacataaatc 18665696  T
Q  336 aatcctaataaaatccaattgttaattcttc 366  Q
    |||||||||||||| ||||||||||||||||    
T  18665697 aatcctaataaaattcaattgttaattcttc 18665727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 81 - 366
Target Start/End: Complemental strand, 4424849 - 4424564
Alignment:
Q  81 ctgcaattcactttctttattcttgtgggtttgattcttcacacttgttgttgttgctgctcttttttaggaacaagtatgagtttcaatcacataaaac 180  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||      |||||||||||||||||| ||| ||||||||||||||||||    
T  4424849 ctgcaattcactttcttcattcttgtgggtttgattcttcacacttgttgttg------ctcttttttaggaacaag-atgggtttcaatcacataaaac 4424757  T
Q  181 aaatacaaataaattgaatcaatgtcaacacaacc---tgaaccca---nnnnnnnctttatctttgtcttccaccgacattttacaatcaaaaatggtg 274  Q
     ||||||||||||||||||||||||||||| ||||   ||||||||          |||| | ||| |||||||| ||||||| |||| |||||||||||    
T  4424756 gaatacaaataaattgaatcaatgtcaacaaaacctcttgaacccatttttattttctttctgtttttcttccactgacatttcacaaccaaaaatggtg 4424657  T
Q  275 aattggnnnnnnngtgtcttatgcttttctattcaaaa--ttaataatttaagaacataaatcaatcctaataaaatccaattgttaattcttc 366  Q
    ||||||        ||| ||||| ||||||||||||||  | |||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  4424656 aattggttttttc-tgtgttatgtttttctattcaaaaattaaatattttaagaacataaatcaatcctaataaaattcaattgttaattcttc 4424564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 37202899 - 37203083
Alignment:
Q  1 taagcggcggctgttaacgaccgctggtttaaatagtagttaactaccgtttatattgatgagagagaaaa--gtatttgcactgcaattcactttcttt 98  Q
    |||||||||||||||||| |||| ||| |  |   |||||||||||||||| |||||||||||||||||||  |||| |||| ||||||||||||||||     
T  37202899 taagcggcggctgttaacaaccgttggctccagccgtagttaactaccgttaatattgatgagagagaaaaaagtatctgcagtgcaattcactttcttc 37202998  T
Q  99 attcttgtgggtttgattcttcacacttgttgttgttgctgctcttttttaggaacaagtatgagtttcaatcacataaaacaaa 183  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||  |||||||||||| |||||||    
T  37202999 attcttgtgggtttgattcttcgcacttgttgttgttgttgctcttttttaggaacaagaatggatttcaatcacatgaaacaaa 37203083  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 37203097 - 37203152
Alignment:
Q  168 aatcacataaaacaaatacaaataaattgaatcaatgtcaacacaacctgaaccca 223  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  37203097 aatcacataaaacaaatacaaataaattgaatcaatgtcaacaaaacctaaaccca 37203152  T

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