View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_21 (Length: 372)
Name: NF2441_low_21
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 34 - 297
Target Start/End: Complemental strand, 3112303 - 3112040
Alignment:
| Q |
34 |
agaccaacactgtgagcaagtcctgcagtaaaagaatggcttgaattggccttctcaactggttcacaaaaagtggccaaagctggattgtcaatgttag |
133 |
Q |
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| T |
3112303 |
agaccaacactgtgagcaagtcctgcagtaaaagaatggcttgaattggccttctcaactggttcacaaaaagtggccaaagctggattgtcaatgttag |
3112204 |
T |
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| Q |
134 |
agacaaaaatttgtattgcatggtttggccacacaaacatcttattcacatgtagcaatggttgcatccaagcctttcctgtaccctttttagcatatag |
233 |
Q |
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| T |
3112203 |
agacaaaaatttgtattgcatggtttggccacacaaacatcttattcacatgtagcaatggttgcatccaagcctttcctgtaccctttttagcatatag |
3112104 |
T |
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| Q |
234 |
cacacaacctttgttccaactttcagaagttggaggagtcaacttcgatacaatcctatgatac |
297 |
Q |
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| T |
3112103 |
cacacaacctttgttccaactttcagaagttggaggagtcaacttcgatacaatcctatgatac |
3112040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 296
Target Start/End: Original strand, 35893721 - 35893984
Alignment:
| Q |
36 |
accaacactgtgagcaagtcctgcagtaaaagaatggcttgaattggccttctcaactggttcacaaaaagtggccaaagctggattgtcaatgttagag |
135 |
Q |
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| T |
35893721 |
accaacactatgagccagtccatcagtaaaggagtgacttgaattagcctcctcaactgtttggcacaaagtggccaatcctaggttgtcaacagaagac |
35893820 |
T |
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| Q |
136 |
acaaaaatttgtattgcatggtttggccacacaaacatcttattcacatgtagcaa---tggttgcatccaagcctttcctgtaccctttttagcatata |
232 |
Q |
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| T |
35893821 |
aaagaaactagttttgcatggtttggccacacaaacttcttattggcatgatggatgagtggttggatccaagccttgccactatcctttttagcataaa |
35893920 |
T |
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| Q |
233 |
gcacacaacctttgttccaactttcagaagttggaggagtcaacttcgatacaatcctatgata |
296 |
Q |
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||||||||| | |||||| ||||||| ||||||||| ||||||| || | ||||||||||| |
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| T |
35893921 |
ttacacaacctctattccaagtttcagatgttggaggaatcaacttggacatgatcctatgata |
35893984 |
T |
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