View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_22 (Length: 353)
Name: NF2441_low_22
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 26752729 - 26752993
Alignment:
| Q |
1 |
cgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggcaaaggaataagcattttgtcctacagggtagaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26752729 |
cgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggcaaaggaataagcattttgtcctacagggtagaaac |
26752828 |
T |
|
| Q |
101 |
ctgctgtgaaggnnnnnnngggggaaagtatgatgttttgttcagggttttctactgagagggtgaaggatgaggtgtgttgaaaatggaagagaaagat |
200 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26752829 |
ctgctgtgaaggtttttttgggggagagtatgatgttttgttcagggttttctactgagagggtgaaggatgaggtgtgttgaaaatggaagagaaagat |
26752928 |
T |
|
| Q |
201 |
gagaaaagttaagaagattggtgatggtgaaggggacattgttggaatcttggggggtgtgatga |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26752929 |
gagaaaagttaagaagattggtgatggtgaaggggacattgttggaatcttggggggtgtgatga |
26752993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 26700339 - 26700448
Alignment:
| Q |
1 |
cgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggcaaaggaataagcattttgtcctacagggtagaaac |
100 |
Q |
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|||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| |
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| T |
26700339 |
cgatttgccacccaaacaacggtagcgttgttgagatttttgtgtttttgggtgaaccatatagcaaaggaataagcattttctccaacagggtagaaac |
26700438 |
T |
|
| Q |
101 |
ctgctgtgaa |
110 |
Q |
| |
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|||||||||| |
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| T |
26700439 |
ctgctgtgaa |
26700448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 26677166 - 26677381
Alignment:
| Q |
1 |
cgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggcaaaggaataagcattttgtcctacagggtagaaac |
100 |
Q |
| |
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||||||||||||||||||| |||| |||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| || || | || || | |
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| T |
26677166 |
cgatttgccatccaaacaacagtagcgttgtttagatttttgtgtatttgagtgaaccatatggcaaaggaataagcattttcaccgacggaataaaagc |
26677265 |
T |
|
| Q |
101 |
ctgctgtgaaggnnnnnnngggggaaagtatgatgttttgttcagggttttctactgagagggtgaaggatgaggtgtgttgaaaatggaagagaaagat |
200 |
Q |
| |
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|||| || || | ||| || | ||| |||| |||||| || ||||| |||||||||| ||| ||||| | |||||||||||||||| ||||| |
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| T |
26677266 |
ctgcggtaaatgtacctttgggtgacattataatgtcttgttcgggtttttccactgagagggagaatgatgatgaatgttgaaaatggaagaacaagat |
26677365 |
T |
|
| Q |
201 |
gagaaaagttaagaag |
216 |
Q |
| |
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||||||||| |||||| |
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| T |
26677366 |
gagaaaagtgaagaag |
26677381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 26688924 - 26688709
Alignment:
| Q |
1 |
cgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggcaaaggaataagcattttgtcctacagggtagaaac |
100 |
Q |
| |
|
||||||||||||||||||| |||| |||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| || || | || || | |
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| T |
26688924 |
cgatttgccatccaaacaacagtagcgttgtttagatttttgtgtatttgagtgaaccatatggcaaaggaataagcattttcaccgacggaataaaagc |
26688825 |
T |
|
| Q |
101 |
ctgctgtgaaggnnnnnnngggggaaagtatgatgttttgttcagggttttctactgagagggtgaaggatgaggtgtgttgaaaatggaagagaaagat |
200 |
Q |
| |
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|||| || || | ||| || | ||| |||| |||||| || ||||| |||||||||| ||| ||||| | |||||||||||||||| ||||| |
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| T |
26688824 |
ctgcggtaaatgtacctttgggtgacattataatgtcttgttcgggtttttccactgagagggagaatgatgatgaatgttgaaaatggaagaacaagat |
26688725 |
T |
|
| Q |
201 |
gagaaaagttaagaag |
216 |
Q |
| |
|
||||||||| |||||| |
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| T |
26688724 |
gagaaaagtgaagaag |
26688709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 26738751 - 26738842
Alignment:
| Q |
1 |
cgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggcaaaggaataagcattttgtcctacagg |
92 |
Q |
| |
|
||||||||||||||||||| ||||| ||| |||| |||||||||||||| |||||||||||||| || ||||||||||||| |||||||| |
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| T |
26738751 |
cgatttgccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtgaaccatatggcgaatgaataagcattttcgcctacagg |
26738842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 26693076 - 26692995
Alignment:
| Q |
1 |
cgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggcaaaggaataagcatttt |
82 |
Q |
| |
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||||||||||||||||||| ||||| |||| ||| |||||||||||||| |||||||||||||| || ||||||||||||| |
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| T |
26693076 |
cgatttgccatccaaacaacggtagcgttggcgaggtttttgtgtttttgagtgaaccatatggcgaatgaataagcatttt |
26692995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 26715511 - 26715592
Alignment:
| Q |
1 |
cgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggcaaaggaataagcatttt |
82 |
Q |
| |
|
||||||||||||||||||| ||||| ||| |||| |||||||||||||| |||||||||||||| || ||||||||||||| |
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| T |
26715511 |
cgatttgccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtgaaccatatggcgaatgaataagcatttt |
26715592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 26745786 - 26745867
Alignment:
| Q |
1 |
cgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggcaaaggaataagcatttt |
82 |
Q |
| |
|
||||| ||||||||||||| ||||| ||| || |||||||||||||| |||||||||||||| || ||||||||||||| |
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| T |
26745786 |
cgattagccatccaaacaacggtaggattggaaaggtttttgtgtttttgagtgaaccatatggcgaatgaataagcatttt |
26745867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 26700486 - 26700562
Alignment:
| Q |
148 |
ttttctactgagagggtgaaggatgaggtgtgttgaaaatggaagagaaagatgagaaaagttaagaagattggtga |
224 |
Q |
| |
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||||| |||||||||| ||| ||||| | ||| |||||| ||||||| |||||||||| ||| || ||||||||||| |
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| T |
26700486 |
ttttcaactgagagggagaatgatgatgagtgctgaaaacggaagaggaagatgagaatagtgaacaagattggtga |
26700562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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