View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_24 (Length: 344)
Name: NF2441_low_24
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_24 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 167 - 344
Target Start/End: Original strand, 29191750 - 29191927
Alignment:
| Q |
167 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacccccgctttcctccgtttctcctccgatctcaacttctccgatgtcgtcc |
266 |
Q |
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| T |
29191750 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgtttctcctccgatctcaacttctccgatgtcgtcc |
29191849 |
T |
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| Q |
267 |
tcaccgttgcattcaacgccaaactccttgtaactccgatcacttttcctttttcgatttcgtttctgttttcgctat |
344 |
Q |
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| T |
29191850 |
tcaccgttgcattcaacgccaaactccttgtaactccgataacttttcctttttcgatttcgtttctgttttcgctat |
29191927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 29191578 - 29191683
Alignment:
| Q |
4 |
cgagagaaaagaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagat---------caaactcactgagtgacgagtgggaaatttcg |
94 |
Q |
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| T |
29191578 |
cgagagtaaaaaggaaaggagagaattcaaaaaaatggcgggaacagttgcagtgagatcaacaacaacaaactcactgagtgacgagtgggaaatttcc |
29191677 |
T |
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| Q |
95 |
ttcgca |
100 |
Q |
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| T |
29191678 |
ttcgca |
29191683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 167 - 338
Target Start/End: Complemental strand, 33634084 - 33633913
Alignment:
| Q |
167 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacccccgctttcctccgtttctcctccgatctcaacttctccgatgtcgtcc |
266 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| | |
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| T |
33634084 |
gttcgcatccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgattctcctccgatctcaacttctccgacgtcgttc |
33633985 |
T |
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| Q |
267 |
tcaccgttgcattcaacgccaaactccttgtaactccgatcacttttcctttttcgatttcgtttctgtttt |
338 |
Q |
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| T |
33633984 |
tcaccgttgccttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgtttt |
33633913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 33634250 - 33634151
Alignment:
| Q |
4 |
cgagagaaaagaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacga |
103 |
Q |
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| T |
33634250 |
cgagagaaaagaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacga |
33634151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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