View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2441_low_26 (Length: 335)

Name: NF2441_low_26
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2441_low_26
NF2441_low_26
[»] chr8 (17 HSPs)
chr8 (87-331)||(7351149-7351392)
chr8 (180-313)||(17871776-17871911)
chr8 (205-311)||(17986233-17986340)
chr8 (173-225)||(7484624-7484676)
chr8 (173-294)||(10934614-10934737)
chr8 (198-275)||(2627206-2627283)
chr8 (173-225)||(5888342-5888395)
chr8 (172-225)||(13080094-13080147)
chr8 (174-267)||(35874504-35874597)
chr8 (247-304)||(37600706-37600763)
chr8 (214-274)||(6189682-6189742)
chr8 (66-94)||(7351593-7351621)
chr8 (242-294)||(13639346-13639398)
chr8 (242-294)||(13739759-13739811)
chr8 (235-275)||(24052897-24052937)
chr8 (235-275)||(30920434-30920474)
chr8 (235-267)||(34181572-34181604)
[»] chr3 (19 HSPs)
chr3 (7-64)||(34899918-34899975)
chr3 (235-275)||(34308023-34308063)
chr3 (173-225)||(30519679-30519732)
chr3 (174-229)||(7823874-7823930)
chr3 (236-292)||(52417700-52417756)
chr3 (173-314)||(54273405-54273548)
chr3 (237-275)||(8036567-8036605)
chr3 (233-275)||(43630317-43630359)
chr3 (173-225)||(331879-331932)
chr3 (173-225)||(7882287-7882340)
chr3 (181-225)||(24694242-24694287)
chr3 (173-225)||(24722693-24722746)
chr3 (218-310)||(39964290-39964383)
chr3 (198-267)||(51723414-51723483)
chr3 (173-225)||(54595796-54595849)
chr3 (75-131)||(2470092-2470148)
chr3 (251-294)||(39682620-39682664)
chr3 (173-225)||(54595871-54595923)
chr3 (196-276)||(54726085-54726165)
[»] chr1 (20 HSPs)
chr1 (180-309)||(28038840-28038971)
chr1 (198-310)||(29043449-29043562)
chr1 (236-276)||(13685683-13685723)
chr1 (198-271)||(15290613-15290686)
chr1 (236-276)||(13507172-13507212)
chr1 (173-225)||(23398425-23398478)
chr1 (198-291)||(31481880-31481973)
chr1 (242-313)||(9675958-9676030)
chr1 (236-276)||(13514354-13514394)
chr1 (236-276)||(13611239-13611279)
chr1 (236-276)||(13650961-13651001)
chr1 (180-227)||(28038906-28038954)
chr1 (173-311)||(50308634-50308774)
chr1 (255-294)||(6156715-6156754)
chr1 (236-275)||(19137446-19137485)
chr1 (180-225)||(33765868-33765914)
chr1 (196-274)||(40960771-40960849)
chr1 (173-225)||(24981922-24981975)
chr1 (173-225)||(46906942-46906995)
chr1 (174-225)||(14967306-14967358)
[»] chr6 (14 HSPs)
chr6 (173-313)||(3203663-3203805)
chr6 (173-225)||(15517097-15517149)
chr6 (173-225)||(34379742-34379794)
chr6 (233-275)||(6686850-6686892)
chr6 (240-277)||(31750696-31750733)
chr6 (173-224)||(10258310-10258362)
chr6 (245-309)||(11073544-11073608)
chr6 (245-311)||(16121044-16121111)
chr6 (173-258)||(12104751-12104837)
chr6 (174-267)||(16121004-16121098)
chr6 (173-225)||(31996580-31996633)
chr6 (173-225)||(34379816-34379869)
chr6 (245-312)||(3203750-3203818)
chr6 (174-225)||(26527271-26527323)
[»] chr5 (11 HSPs)
chr5 (198-311)||(13391563-13391677)
chr5 (173-294)||(7613369-7613492)
chr5 (180-309)||(25694128-25694259)
chr5 (198-267)||(12922404-12922473)
chr5 (245-311)||(8717786-8717853)
chr5 (247-292)||(5865922-5865968)
chr5 (235-272)||(6380588-6380625)
chr5 (173-225)||(10437718-10437771)
chr5 (173-225)||(31785956-31786009)
chr5 (235-294)||(22227050-22227110)
chr5 (173-228)||(25694193-25694249)
[»] chr2 (22 HSPs)
chr2 (173-310)||(23143492-23143631)
chr2 (173-310)||(23555282-23555421)
chr2 (174-314)||(5559436-5559578)
chr2 (198-276)||(40255507-40255585)
chr2 (173-225)||(21183408-21183461)
chr2 (173-311)||(44587637-44587777)
chr2 (199-291)||(35498155-35498248)
chr2 (172-225)||(14022889-14022943)
chr2 (174-310)||(19268067-19268205)
chr2 (237-302)||(33129077-33129143)
chr2 (173-225)||(1961390-1961443)
chr2 (198-275)||(2544383-2544460)
chr2 (173-225)||(3121428-3121481)
chr2 (173-225)||(8510586-8510639)
chr2 (173-225)||(11726576-11726629)
chr2 (173-225)||(13882764-13882817)
chr2 (173-225)||(15119783-15119836)
chr2 (173-225)||(31024177-31024230)
chr2 (198-275)||(43341161-43341238)
chr2 (173-225)||(13994271-13994323)
chr2 (180-267)||(38181773-38181861)
chr2 (251-294)||(40363230-40363274)
[»] chr7 (17 HSPs)
chr7 (173-294)||(44182533-44182655)
chr7 (173-225)||(5950275-5950328)
chr7 (251-307)||(3106031-3106087)
chr7 (234-268)||(18320260-18320294)
chr7 (237-294)||(35436297-35436355)
chr7 (251-311)||(2456330-2456391)
chr7 (173-225)||(2943218-2943271)
chr7 (256-320)||(3094425-3094490)
chr7 (258-310)||(3967700-3967753)
chr7 (173-225)||(10095725-10095778)
chr7 (173-225)||(23818430-23818483)
chr7 (173-225)||(25245224-25245277)
chr7 (198-275)||(27163196-27163273)
chr7 (173-225)||(43103078-43103131)
chr7 (251-294)||(3967790-3967834)
chr7 (173-228)||(34478313-34478369)
chr7 (243-275)||(40800114-40800146)
[»] chr4 (12 HSPs)
chr4 (173-225)||(55935994-55936046)
chr4 (233-274)||(2324639-2324680)
chr4 (173-225)||(23568461-23568514)
chr4 (198-275)||(46462412-46462489)
chr4 (173-224)||(21224692-21224743)
chr4 (174-227)||(43616224-43616278)
chr4 (174-267)||(24448704-24448797)
chr4 (198-275)||(25700489-25700566)
chr4 (173-225)||(55934646-55934699)
chr4 (173-225)||(55936068-55936121)
chr4 (235-275)||(11045678-11045718)
chr4 (235-275)||(11047526-11047566)
[»] scaffold0006 (1 HSPs)
scaffold0006 (236-276)||(140722-140762)
[»] scaffold0065 (1 HSPs)
scaffold0065 (180-225)||(39190-39236)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 87 - 331
Target Start/End: Complemental strand, 7351392 - 7351149
Alignment:
Q  87 caaatgacacaattaacggaaattgtcttgattgaaatttaaaagtgatagtgtaactgataatcttggtataaatacttccttgtgtcactgttataag 186  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||  | |||||||||||||    
T  7351392 caaataacacaattaacggaaattgtcttgattgaaatttgaaagtgatagtgtaactgataatctcggtataaatactccctcctatcactgttataag 7351293  T
Q  187 caaaaacaaacttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaaattgttttttac 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  7351292 caaaaacaaacttttaggttcatttattaaatgatgtatttgactaacaatatagac-aaatatatcatttattcaatgaagctaaaaattgttttttac 7351194  T
Q  287 ttataatattgatgggagggagtatattctttgttcatctcactc 331  Q
    |||||||| ||||||||||||||||||||||||| || |||||||    
T  7351193 ttataatagtgatgggagggagtatattctttgtccaactcactc 7351149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 313
Target Start/End: Original strand, 17871776 - 17871911
Alignment:
Q  180 ttataagcaaaaacaaactttt-agattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacct-aaaaatt 277  Q
    |||||||||||||  ||||||| || |||||| |||||||||||||||||   || |||||| |||||||| |||||||| | ||||||||| |||||||    
T  17871776 ttataagcaaaaatcaactttttaggttcattcattaaatgatgtatttggtcaataatatagactaaatacatcatttaatgaatgaacctaaaaaatt 17871875  T
Q  278 gttttttacttataatattgatgggagggagtatat 313  Q
    | ||||| ||||||||| |||   ||||||||||||    
T  17871876 gatttttgcttataatagtgactagagggagtatat 17871911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 311
Target Start/End: Original strand, 17986233 - 17986340
Alignment:
Q  205 ttcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaaa-ttgttttttacttataatattgatggga 303  Q
    |||||| |||||||||||||||||   || || ||| |||||||| |||||||| | |||||||||||||| ||| ||||||||||||||| |||| |||    
T  17986233 ttcattcattaaatgatgtatttggtcaataacatagactaaatacatcatttaatgaatgaacctaaaaagttgatttttacttataatagtgatcgga 17986332  T
Q  304 gggagtat 311  Q
    | ||||||    
T  17986333 gagagtat 17986340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 7484624 - 7484676
Alignment:
Q  173 gtcactgttataagcaaaaacaaacttttagattcatttattaaatgatgtat 225  Q
    |||||||||||||||||||||| | ||||||||||||| ||||||||||||||    
T  7484624 gtcactgttataagcaaaaacataattttagattcattcattaaatgatgtat 7484676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 10934737 - 10934614
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaaccta 271  Q
    |||||| |||||||||||||  ||| ||||||||||||| |||||||||||||| ||    |||||| | |||| ||| |||||| ||| ||||||  ||    
T  10934737 gtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtatgtggtctacaataaagactacatacatcattaattaaatgaatgta 10934638  T
Q  272 aaa-attgttttttacttataata 294  Q
    ||| || ||||||| |||||||||    
T  10934637 aaatatagttttttgcttataata 10934614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 2627206 - 2627283
Alignment:
Q  198 ttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaaa 275  Q
    ||||||||||||| | ||||| |||||||||   || |||||| |||||||| | |||||||| ||||||| ||||||    
T  2627206 ttttagattcattcaataaataatgtatttggtcaataatatagactaaatacaccatttattgaatgaacttaaaaa 2627283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 5888342 - 5888395
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  5888342 gtcactattataagcaaaaattaacgttttagattcattcattaaatgatgtat 5888395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 13080094 - 13080147
Alignment:
Q  172 tgtcactgttataagcaaaaacaaacttttagattcatttattaaatgatgtat 225  Q
    ||||||| |||||| ||||| |||  ||||||||||||| ||||||||||||||    
T  13080094 tgtcactattataaccaaaatcaacattttagattcattcattaaatgatgtat 13080147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 35874597 - 35874504
Alignment:
Q  174 tcactgttataagcaaaaacaaacttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaa 267  Q
    ||||| ||||||| |||||  |||||||| ||||||| |||||||||||||| ||| | | |||| | |||| ||| |||||| ||| ||||||    
T  35874597 tcactattataaggaaaaatcaacttttacattcattaattaaatgatgtatgtgatttataataaagactatatacatcattaattaaatgaa 35874504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 37600763 - 37600706
Alignment:
Q  247 atatatcatttattcaatgaacctaaaaattgttttttacttataatattgatgggag 304  Q
    |||||||||||||||||||||| |||||| | ||||||  |||||||| |||| ||||    
T  37600763 atatatcatttattcaatgaacttaaaaaatcttttttgtttataatagtgatcggag 37600706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 6189682 - 6189742
Alignment:
Q  214 taaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaa 274  Q
    |||||||||||||||   || |||||| |||||||| |||||||||| |||||| ||||||    
T  6189682 taaatgatgtatttggtcaataatatagactaaatacatcatttattgaatgaatctaaaa 6189742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 94
Target Start/End: Complemental strand, 7351621 - 7351593
Alignment:
Q  66 gtcccgtgctaatagtcattacaaatgac 94  Q
    |||||||||||||||||||||||||||||    
T  7351621 gtcccgtgctaatagtcattacaaatgac 7351593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 13639398 - 13639346
Alignment:
Q  242 actaaatatatcatttattcaatgaacctaaaaattgttttttacttataata 294  Q
    |||||||| |||||||||||||| ||| |||||||||||| | | ||||||||    
T  13639398 actaaatacatcatttattcaataaacataaaaattgtttgtcatttataata 13639346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 13739811 - 13739759
Alignment:
Q  242 actaaatatatcatttattcaatgaacctaaaaattgttttttacttataata 294  Q
    |||||||| |||||||||||||| ||| |||||||||||| | | ||||||||    
T  13739811 actaaatacatcatttattcaataaacataaaaattgtttgtcatttataata 13739759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 24052897 - 24052937
Alignment:
Q  235 aatataaactaaatatatcatttattcaatgaacctaaaaa 275  Q
    ||||||||| | ||| |||||||||||||||||||||||||    
T  24052897 aatataaaccatatacatcatttattcaatgaacctaaaaa 24052937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 30920474 - 30920434
Alignment:
Q  235 aatataaactaaatatatcatttattcaatgaacctaaaaa 275  Q
    ||||||||||||||| || ||||||||||||||||| ||||    
T  30920474 aatataaactaaatacataatttattcaatgaacctgaaaa 30920434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 34181572 - 34181604
Alignment:
Q  235 aatataaactaaatatatcatttattcaatgaa 267  Q
    ||||||||||||||| |||||||||||||||||    
T  34181572 aatataaactaaatacatcatttattcaatgaa 34181604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 34899975 - 34899918
Alignment:
Q  7 atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctc 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899975 atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctc 34899918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 34308063 - 34308023
Alignment:
Q  235 aatataaactaaatatatcatttattcaatgaacctaaaaa 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34308063 aatataaactaaatatatcatttattcaatgaacctaaaaa 34308023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 30519732 - 30519679
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  30519732 gtcactattataagcaaaaaccaacattttagattcattcattaaatgatgtat 30519679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 7823874 - 7823930
Alignment:
Q  174 tcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtatttga 229  Q
    ||||| |||||||||| ||  ||| ||||||||||||||||||||||||||||||||    
T  7823874 tcactattataagcaataaataacattttagattcatttattaaatgatgtatttga 7823930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 52417756 - 52417700
Alignment:
Q  236 atataaactaaatatatcatttattcaatgaacctaaaaattgttttttacttataa 292  Q
    |||||||||||||| || | |||||| |||||| |||||||| ||||||||||||||    
T  52417756 atataaactaaatacattagttattcgatgaacttaaaaattattttttacttataa 52417700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 54273405 - 54273548
Alignment:
Q  173 gtcactgttataagcaaaaac-aaacttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaaccta 271  Q
    |||||| ||||||||||||   ||| |||||  |||||| | |||||||||||||||    | ||||| |||||||||  |||||||||  |||||||||    
T  54273405 gtcactattataagcaaaagttaaagttttaagttcattgaataaatgatgtatttggtatataatattaactaaatacgtcatttatttgatgaaccta 54273504  T
Q  272 aaa-attgttttttacttataatattgatgggagggagtatatt 314  Q
    |||  ||| ||||||||||||||| |||| |||| || ||||||    
T  54273505 aaatgttgatttttacttataatagtgatcggagagattatatt 54273548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 8036605 - 8036567
Alignment:
Q  237 tataaactaaatatatcatttattcaatgaacctaaaaa 275  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  8036605 tataaactaaatacatcagttattcaatgaacctaaaaa 8036567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 43630317 - 43630359
Alignment:
Q  233 acaatataaactaaatatatcatttattcaatgaacctaaaaa 275  Q
    ||||| ||||||||||  |||||||||||||||||||||||||    
T  43630317 acaatgtaaactaaatgcatcatttattcaatgaacctaaaaa 43630359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 331932 - 331879
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  331932 gtcactattataagcaaaaattaacattttagattcattcattaaatgatgtat 331879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 7882287 - 7882340
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  7882287 gtcactattataagcaaaaattaacattttagattcattaattaaatgatgtat 7882340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 24694242 - 24694287
Alignment:
Q  181 tataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||||    
T  24694242 tataagcaaaaatcaacattttagattcatttattaaatgatgtat 24694287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 24722693 - 24722746
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||  ||||||||||||||||||||||||||||    
T  24722693 gtcactattataagcaaaaattaatattttagattcatttattaaatgatgtat 24722746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 310
Target Start/End: Complemental strand, 39964383 - 39964290
Alignment:
Q  218 tgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaaa-ttgttttttacttataatattgatgggagggagta 310  Q
    |||||||| |||| |  |||||| |||| ||| || |||||||||||||| ||||||| | ||||||| ||||||||| |||  ||||||||||    
T  39964383 tgatgtatgtgaccattaatatagactacatacataatttattcaatgaatctaaaaagtagttttttgcttataataatgaccggagggagta 39964290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 51723414 - 51723483
Alignment:
Q  198 ttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaa 267  Q
    ||||||||||||| | ||| | ||||||||||   | |||||| |||||||||||||||||| |||||||    
T  51723414 ttttagattcattgagtaattaatgtatttgatatagaatatagactaaatatatcatttatacaatgaa 51723483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 54595796 - 54595849
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  54595796 gtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 54595849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 2470148 - 2470092
Alignment:
Q  75 taatagtcattacaaatgacacaattaacggaaattgtcttgattgaaatttaaaag 131  Q
    ||||||||||| |||||||||||| ||||| |||  |||||  ||||||||||||||    
T  2470148 taatagtcattgcaaatgacacaactaacgaaaaccgtctttgttgaaatttaaaag 2470092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 39682664 - 39682620
Alignment:
Q  251 atcatttattcaatgaaccta-aaaattgttttttacttataata 294  Q
    ||||||||||||||||||||| |||||  ||||||||||||||||    
T  39682664 atcatttattcaatgaacctaaaaaataattttttacttataata 39682620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 54595923 - 54595871
Alignment:
Q  173 gtcactgttataagcaaaaacaaacttttagattcatttattaaatgatgtat 225  Q
    |||||| ||||||| ||||| | | ||||||||||||| ||||||||||||||    
T  54595923 gtcactattataagtaaaaatataattttagattcattcattaaatgatgtat 54595871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 54726165 - 54726085
Alignment:
Q  196 acttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaaat 276  Q
    ||||||||||||||||| | |||||| ||| ||| | | |||||| || | |||||| ||| ||| |||||||||||||||    
T  54726165 acttttagattcatttaattaatgatatatgtgatttataatatagaccacatatattattaattgaatgaacctaaaaat 54726085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 309
Target Start/End: Original strand, 28038840 - 28038971
Alignment:
Q  180 ttataagcaaaaacaaactttt-agattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaaa-tt 277  Q
    |||||||||||||  ||||||| ||||||||| |||||||| ||||||||   || ||||||||||||||| |||||||| | |||||| ||||||| ||    
T  28038840 ttataagcaaaaattaactttttagattcattcattaaatgttgtatttggtcaataatataaactaaatacatcatttaataaatgaatctaaaaagtt 28038939  T
Q  278 gttttttacttataatattgatgggagggagt 309  Q
    | ||||| ||||||||| | || |||||||||    
T  28038940 gatttttgcttataatagtaatcggagggagt 28038971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 310
Target Start/End: Complemental strand, 29043562 - 29043449
Alignment:
Q  198 ttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaaa-ttgttttttacttataatatt 296  Q
    |||||| |||||| | |||||||||||||||   || |||||| ||||||||  ||||||||| |||||||||||||| ||| ||||| ||||||||| |    
T  29043562 ttttaggttcattcaataaatgatgtatttggtcaaaaatatagactaaatacgtcatttattgaatgaacctaaaaagttgatttttgcttataataat 29043463  T
Q  297 gatgggagggagta 310  Q
    ||  ||||||||||    
T  29043462 gagcggagggagta 29043449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 13685683 - 13685723
Alignment:
Q  236 atataaactaaatatatcatttattcaatgaacctaaaaat 276  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13685683 atataaactaaatatatcatttattcaatgaacctaaaaat 13685723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 15290686 - 15290613
Alignment:
Q  198 ttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaaccta 271  Q
    ||||||||||||||| |||||||||||||||   || |||||| |||||||| |||||||| | ||||||||||    
T  15290686 ttttagattcatttaataaatgatgtatttggtcaataatatagactaaatacatcatttaatgaatgaaccta 15290613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 13507172 - 13507212
Alignment:
Q  236 atataaactaaatatatcatttattcaatgaacctaaaaat 276  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  13507172 atataaactaaatacatcatttattcaatgaacctaaaaat 13507212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 23398425 - 23398478
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  23398425 gtcactattataagcaaaaactaacattttagattcattcattaaatgatgtat 23398478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 31481973 - 31481880
Alignment:
Q  198 ttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaaattgttttttacttata 291  Q
    |||||| |||||| ||| |||||||||| ||| | | ||||||||| | |||||||||| | | |||||||||||||| || ||||| ||||||    
T  31481973 ttttaggttcattcatttaatgatgtatgtgattcataatataaaccacatatatcattaaatgaatgaacctaaaaagtgatttttgcttata 31481880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 9676030 - 9675958
Alignment:
Q  242 actaaatatatcatttattcaatgaacctaaaaa-ttgttttttacttataatattgatgggagggagtatat 313  Q
    |||||||| || ||||||| |||||||||||||| ||  ||||||||||||||| |||  |||||||||||||    
T  9676030 actaaatacattatttattaaatgaacctaaaaagttaatttttacttataatagtgaccggagggagtatat 9675958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 13514354 - 13514394
Alignment:
Q  236 atataaactaaatatatcatttattcaatgaacctaaaaat 276  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  13514354 atataaactaaatacatcatttattcaatgaacttaaaaat 13514394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 13611239 - 13611279
Alignment:
Q  236 atataaactaaatatatcatttattcaatgaacctaaaaat 276  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  13611239 atataaactaaatacatcatttattcaatgaacttaaaaat 13611279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 13650961 - 13651001
Alignment:
Q  236 atataaactaaatatatcatttattcaatgaacctaaaaat 276  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  13650961 atataaactaaatacatcgtttattcaatgaacctaaaaat 13651001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 28038954 - 28038906
Alignment:
Q  180 ttataagcaaaaacaaactttt-agattcatttattaaatgatgtattt 227  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  28038954 ttataagcaaaaatcaactttttagattcatttattaaatgatgtattt 28038906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 311
Target Start/End: Original strand, 50308634 - 50308774
Alignment:
Q  173 gtcactgttataagcaaaaa-caaacttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaaccta 271  Q
    |||||| ||||||||||||| |||  ||||||||| ||| ||||||| |||||||||   || || ||| || ||||| |||||||| | ||||||| ||    
T  50308634 gtcactattataagcaaaaatcaactttttagatttattcattaaattatgtatttggtcaataacatagaccaaatacatcatttaatgaatgaactta 50308733  T
Q  272 aaa-attgttttttacttataatattgatgggagggagtat 311  Q
    |||  ||| ||||| ||||||||| |||| |||| ||||||    
T  50308734 aaatgttggtttttgcttataatagtgatcggagagagtat 50308774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 6156715 - 6156754
Alignment:
Q  255 tttattcaatgaacctaaaaattgttttttacttataata 294  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  6156715 tttattcaatgaacctaaaaatttatttttacttataata 6156754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 19137485 - 19137446
Alignment:
Q  236 atataaactaaatatatcatttattcaatgaacctaaaaa 275  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  19137485 atataaactaaatacatcgtttattcaatgaacctaaaaa 19137446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 33765914 - 33765868
Alignment:
Q  180 ttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||||    
T  33765914 ttataagcaaaaatcaacattttagattcatttattaaatgatgtat 33765868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 274
Target Start/End: Complemental strand, 40960849 - 40960771
Alignment:
Q  196 acttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaa 274  Q
    ||||||||||||||| | | ||| ||||||||||   | ||||||||| | |||||||||| ||| |||||||||||||    
T  40960849 acttttagattcattcaatcaataatgtatttgatctataatataaaccatatatatcattgattgaatgaacctaaaa 40960771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 24981975 - 24981922
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  24981975 gtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 24981922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 46906995 - 46906942
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    ||||||||||||||||||||  ||| |||||||| |||| ||||||||||||||    
T  46906995 gtcactgttataagcaaaaatcaacgttttagatacattcattaaatgatgtat 46906942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 14967358 - 14967306
Alignment:
Q  174 tcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    ||||| |||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  14967358 tcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 14967306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 313
Target Start/End: Complemental strand, 3203805 - 3203663
Alignment:
Q  173 gtcactgttataagcaaaaacaaactttt-agattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaaccta 271  Q
    |||||| |||||||||||||  ||||||| || |||||||| |||||||||||||||   || |||||| |||  ||| |||||| ||| ||||||||||    
T  3203805 gtcactattataagcaaaaatcaactttttaggttcatttaataaatgatgtatttggtcaagaatatagacttgatacatcattcattgaatgaaccta 3203706  T
Q  272 -aaaattgttttttacttataatattgatgggagggagtatat 313  Q
     ||||||| ||||| ||||||||| |||  |||||||||||||    
T  3203705 aaaaattgatttttgcttataatagtgaccggagggagtatat 3203663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 15517097 - 15517149
Alignment:
Q  173 gtcactgttataagcaaaaacaaacttttagattcatttattaaatgatgtat 225  Q
    |||||| ||||||||||||||| | ||||||||||||| ||||||||||||||    
T  15517097 gtcactattataagcaaaaacataattttagattcattcattaaatgatgtat 15517149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 34379742 - 34379794
Alignment:
Q  173 gtcactgttataagcaaaaacaaacttttagattcatttattaaatgatgtat 225  Q
    |||||| ||||||||||||||| | ||||||||||||| ||||||||||||||    
T  34379742 gtcactattataagcaaaaacataattttagattcattcattaaatgatgtat 34379794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 6686892 - 6686850
Alignment:
Q  233 acaatataaactaaatatatcatttattcaatgaacctaaaaa 275  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  6686892 acaatgtaaactaaatacatcatttattcaatgaacctaaaaa 6686850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 31750696 - 31750733
Alignment:
Q  240 aaactaaatatatcatttattcaatgaacctaaaaatt 277  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  31750696 aaactaaatatatcatttattcaatgaacttaaaaatt 31750733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 10258310 - 10258362
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgta 224  Q
    ||||||||||||| ||||||  ||| |||||||||||||||||||||||||||    
T  10258310 gtcactgttataaacaaaaatcaacattttagattcatttattaaatgatgta 10258362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 11073544 - 11073608
Alignment:
Q  245 aaatatatcatttattcaatgaacctaaaaattgttttttacttataatattgatgggagggagt 309  Q
    ||||| |||||||||| |||||||||||||||  |||||| ||||||||| |||  |||||||||    
T  11073544 aaatacatcatttatttaatgaacctaaaaataattttttgcttataataatgaccggagggagt 11073608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 16121044 - 16121111
Alignment:
Q  245 aaatatatcatttattcaatgaacctaaaaa-ttgttttttacttataatattgatgggagggagtat 311  Q
    ||||| |||||||||| |||||| ||||||| ||| ||||| ||||||||| |||| |||||||||||    
T  16121044 aaatacatcatttatttaatgaatctaaaaagttgatttttgcttataatagtgatcggagggagtat 16121111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 12104751 - 12104837
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcattta 258  Q
    |||||| |||||||||||||  ||| ||||| |||||||||||||||||||||| ||| | | |||| | |||| |||||| |||||    
T  12104751 gtcactattataagcaaaaatcaacattttaaattcatttattaaatgatgtatgtgatttataataaagactatatatatgattta 12104837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 16121098 - 16121004
Alignment:
Q  174 tcactgttataagcaaaaacaaactttt-agattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaa 267  Q
    ||||| |||||||||||||  ||||||| ||||||||| | |||||||||||||||   || |||||| || || || |||||||||| ||||||    
T  16121098 tcactattataagcaaaaatcaactttttagattcattaaataaatgatgtatttggtcaataatatagaccaagtacatcatttattgaatgaa 16121004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 31996633 - 31996580
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| |||||| |||||||||||||||||||||    
T  31996633 gtcactattataagcaaaaatcaacattttaggttcatttattaaatgatgtat 31996580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 34379869 - 34379816
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  34379869 gtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 34379816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 3203750 - 3203818
Alignment:
Q  245 aaatatatcatttattcaatgaacctaaaaa-ttgttttttacttataatattgatgggagggagtata 312  Q
    ||||| |||||||||| |||||||||||||| ||| ||||| ||||||||| |||  ||||| ||||||    
T  3203750 aaatacatcatttattaaatgaacctaaaaagttgatttttgcttataatagtgactggaggaagtata 3203818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 26527323 - 26527271
Alignment:
Q  174 tcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    ||||| |||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  26527323 tcactattataagcaaaaattaacattttagattcattcattaaatgatgtat 26527271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 311
Target Start/End: Original strand, 13391563 - 13391677
Alignment:
Q  198 ttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaaa-ttgttttttacttataatatt 296  Q
    ||||||||||||| | |||||||||||||||   || |||||| |||||||| || ||||||| |||||||||||||| ||| ||||| ||||||| | |    
T  13391563 ttttagattcattcaataaatgatgtatttggtcaataatatagactaaatacataatttattgaatgaacctaaaaagttgatttttgcttataacagt 13391662  T
Q  297 gatgggagggagtat 311  Q
    ||  |||||||||||    
T  13391663 gacaggagggagtat 13391677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 7613492 - 7613369
Alignment:
Q  173 gtcactgttataagcaaaaacaaactttt-agattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaaccta 271  Q
    |||||||||||||| ||||   ||||||| ||||||||||| |||||||||||||||  ||| |||||| ||||||||   |||||| | ||||||| ||    
T  7613492 gtcactgttataagtaaaagtcaactttttagattcatttaataaatgatgtatttggttaataatatagactaaatactgcatttaatgaatgaactta 7613393  T
Q  272 aaaa-ttgttttttacttataata 294  Q
    |||| ||| ||||| |||||||||    
T  7613392 aaaagttgatttttgcttataata 7613369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 309
Target Start/End: Original strand, 25694128 - 25694259
Alignment:
Q  180 ttataagcaaaaacaaacttt-tagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaaccta-aaaatt 277  Q
    |||||||||||||  |||||| ||| |||||| ||||||||||||||||    || |||||| || ||||| |||||||| | |||||||||| ||| ||    
T  25694128 ttataagcaaaaatcaactttctaggttcattcattaaatgatgtattttgtcaataatatagaccaaatacatcatttaatgaatgaacctagaaagtt 25694227  T
Q  278 gttttttacttataatattgatgggagggagt 309  Q
    | ||||| ||||||||| |||  |||||||||    
T  25694228 gatttttgcttataatagtgaccggagggagt 25694259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 12922404 - 12922473
Alignment:
Q  198 ttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaa 267  Q
    ||||| ||||||| | |||||||||||||||  ||| |||||| || |||||||||||||||| ||||||    
T  12922404 ttttatattcattcaataaatgatgtatttgtttaataatatagaccaaatatatcatttattgaatgaa 12922473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 8717786 - 8717853
Alignment:
Q  245 aaatatatcatttattcaatgaacctaaaaa-ttgttttttacttataatattgatgggagggagtat 311  Q
    ||||| || ||||||| |||||||||||||| ||| ||||| ||||||||| |||| |||||||||||    
T  8717786 aaatacattatttattgaatgaacctaaaaatttgatttttgcttataatagtgatcggagggagtat 8717853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 5865922 - 5865968
Alignment:
Q  247 atatatcatttattcaatgaacctaaaaat-tgttttttacttataa 292  Q
    |||||||| ||||||||||||||||||||| |||||||| |||||||    
T  5865922 atatatcaattattcaatgaacctaaaaatgtgttttttgcttataa 5865968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 6380588 - 6380625
Alignment:
Q  235 aatataaactaaatatatcatttattcaatgaacctaa 272  Q
    ||||||||||||||| || |||||||||||||||||||    
T  6380588 aatataaactaaatacattatttattcaatgaacctaa 6380625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 10437771 - 10437718
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| ||||||||||||||||||||| ||||||    
T  10437771 gtcactattataagcaaaaatcaacattttagattcatttattaaattatgtat 10437718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 31786009 - 31785956
Alignment:
Q  173 gtcactgttataagcaaaaa-caaacttttagattcatttattaaatgatgtat 225  Q
    |||||||||||||||||||| ||| |||||| ||||||||| ||||| ||||||    
T  31786009 gtcactgttataagcaaaaatcaaccttttaaattcatttaataaattatgtat 31785956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 22227050 - 22227110
Alignment:
Q  235 aatataaactaaatatatcatttattcaatgaacctaaaa-attgttttttacttataata 294  Q
    |||||| ||||||||||||||||| | |||||||||||||  ||| ||||| |||||||||    
T  22227050 aatatagactaaatatatcatttaatgaatgaacctaaaacgttgatttttgcttataata 22227110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 25694249 - 25694193
Alignment:
Q  173 gtcactgttataagcaaaaacaaacttt-tagattcatttattaaatgatgtatttg 228  Q
    |||||| |||||||||||||  |||||| ||| |||||| |||||||||||||||||    
T  25694249 gtcactattataagcaaaaatcaactttctaggttcattcattaaatgatgtatttg 25694193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 310
Target Start/End: Original strand, 23143492 - 23143631
Alignment:
Q  173 gtcactgttataagcaaaaacaaactttt-agattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaaccta 271  Q
    |||||| |||||||||||||  ||||||| || |||| ||| ||||||||||||||||   ||| |||  || ||||| |||||||||| ||| ||||||    
T  23143492 gtcactattataagcaaaaatcaactttttaggttcacttaataaatgatgtatttgatctacattatggaccaaatacatcatttattgaataaaccta 23143591  T
Q  272 aaaa-ttgttttttacttataatattgatgggagggagta 310  Q
    |||| ||| ||||| ||||||||| |||  ||||||||||    
T  23143592 aaaagttgatttttgcttataatagtgaccggagggagta 23143631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 310
Target Start/End: Original strand, 23555282 - 23555421
Alignment:
Q  173 gtcactgttataagcaaaaacaaactttt-agattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaaccta 271  Q
    |||||| |||||||||||||  ||||||| || |||| ||| ||||||||||||||||   ||| |||  || ||||| |||||||||| ||| ||||||    
T  23555282 gtcactattataagcaaaaatcaactttttaggttcacttaataaatgatgtatttgatctacattatggaccaaatacatcatttattgaataaaccta 23555381  T
Q  272 aaaa-ttgttttttacttataatattgatgggagggagta 310  Q
    |||| ||| ||||| ||||||||| |||  ||||||||||    
T  23555382 aaaagttgatttttgcttataatagtgaccggagggagta 23555421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 5559436 - 5559578
Alignment:
Q  174 tcactgttataagcaaaaa-caaacttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaa 272  Q
    ||||||||||||| ||||| |||  |||||||||||||||||||||| |||||||    || || ||| |||||||| || ||||| | ||||||  |||    
T  5559436 tcactgttataagtaaaaatcaattttttagattcatttattaaatgttgtattttgtcaataacatagactaaatacataatttaatgaatgaatataa 5559535  T
Q  273 aaa-ttgttttttacttataatattgatgggagggagtatatt 314  Q
    ||| ||| ||||| ||||||| | | || ||||||||||||||    
T  5559536 aaagttgatttttgcttataacagtaattggagggagtatatt 5559578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 40255585 - 40255507
Alignment:
Q  198 ttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaaat 276  Q
    ||||||||||||| | ||| |||  |||||||  || |||||||||||||||||| | |||||||||||| ||||||||    
T  40255585 ttttagattcattgaataactgaactatttgatcaataatataaactaaatatataaattattcaatgaatctaaaaat 40255507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 21183461 - 21183408
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    ||||||||||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  21183461 gtcactgttataagcaaaaatcaacattttagattcattcattaaatgatgtat 21183408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 311
Target Start/End: Complemental strand, 44587777 - 44587637
Alignment:
Q  173 gtcactgttataagcaaaaacaaactttt-agattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaaccta 271  Q
    |||||| |||||||||||||   |||||| ||||||||| | | | |||||||| ||   | ||||||| || | ||| |||||||||||||||||||||    
T  44587777 gtcactattataagcaaaaaactactttttagattcattgaatgagtgatgtatgtggtcatcaatatagaccacatacatcatttattcaatgaaccta 44587678  T
Q  272 -aaaattgttttttacttataatattgatgggagggagtat 311  Q
     ||||| || |||| ||||||||| |||  |||||||||||    
T  44587677 aaaaatagtattttgcttataataatgaccggagggagtat 44587637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 35498155 - 35498248
Alignment:
Q  199 tttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacct--aaaaattgttttttacttata 291  Q
    |||||||||||| | |||||||||||||| |  || || ||| || ||||| |||||||||| |||||||||  |||||||| ||||||||||||    
T  35498155 tttagattcattcaataaatgatgtatttaatcaataa-atagaccaaatacatcatttattgaatgaacctaaaaaaattgatttttacttata 35498248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 14022943 - 14022889
Alignment:
Q  172 tgtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    ||||||| |||||| ||||||| ||| ||||||||||||| ||||||||||||||    
T  14022943 tgtcactattataatcaaaaactaacattttagattcattcattaaatgatgtat 14022889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 310
Target Start/End: Original strand, 19268067 - 19268205
Alignment:
Q  174 tcactgttataagcaaaaa-caaacttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaa 272  Q
    ||||||||||||||||||| |||  |||||  |||||| | ||||||||||||||    || |||||| |  ||||| || |||| || |||||||||||    
T  19268067 tcactgttataagcaaaaatcaactttttaagttcattcaataaatgatgtatttagtcaataatatagatgaaatacattatttcttaaatgaacctaa 19268166  T
Q  273 aaa-ttgttttttacttataatattgatgggagggagta 310  Q
    ||| ||| || || ||||||||||||||  |||||||||    
T  19268167 aaagttgattgttgcttataatattgattagagggagta 19268205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 33129143 - 33129077
Alignment:
Q  237 tataaactaaatatatcatttattcaatgaacctaaaa-attgttttttacttataatattgatggg 302  Q
    |||| |||| |||||| ||||| | ||||||||||||| |||| ||||||||||||||| |||||||    
T  33129143 tatagactacatatattatttaatgaatgaacctaaaatattgatttttacttataatagtgatggg 33129077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 1961443 - 1961390
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  1961443 gtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 1961390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 2544383 - 2544460
Alignment:
Q  198 ttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaaa 275  Q
    ||||||||||||| |||||||||  ||||||   || |||||| || ||||| |||||||| | ||||||||||||||    
T  2544383 ttttagattcattcattaaatgacttatttggtcaataatatagaccaaatacatcatttaatgaatgaacctaaaaa 2544460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 3121428 - 3121481
Alignment:
Q  173 gtcactgttataagcaaaaa-caaacttttagattcatttattaaatgatgtat 225  Q
    |||||| ||||||||||||| |||  ||||||||||||||||||||| ||||||    
T  3121428 gtcactattataagcaaaaatcaatattttagattcatttattaaataatgtat 3121481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 8510639 - 8510586
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||| ||| |||| |||||||| ||||||||||||||    
T  8510639 gtcactattataagcaaaaactaacattttggattcattcattaaatgatgtat 8510586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 11726629 - 11726576
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  11726629 gtcactattataagcaaaaattaacattttagattcattcattaaatgatgtat 11726576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 13882817 - 13882764
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||| ||||||| ||| ||||||||||||| ||||||||||||||    
T  13882817 gtcactattataaacaaaaactaacattttagattcattcattaaatgatgtat 13882764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 15119783 - 15119836
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  15119783 gtcactattataagcaaaaattaacattttagattcattcattaaatgatgtat 15119836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 31024177 - 31024230
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  31024177 gtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 31024230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 43341161 - 43341238
Alignment:
Q  198 ttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaaa 275  Q
    ||||||||||||| | ||||||||| || ||  | | ||||| ||||| |||||||||||||| |||||| |||||||    
T  43341161 ttttagattcattcaataaatgatgcatgtggtttataatatgaactacatatatcatttattaaatgaatctaaaaa 43341238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 13994323 - 13994271
Alignment:
Q  173 gtcactgttataagcaaaaacaaacttttagattcatttattaaatgatgtat 225  Q
    |||||| ||||||||||||  ||  ||||||||||||| ||||||||||||||    
T  13994323 gtcactattataagcaaaactaacattttagattcattcattaaatgatgtat 13994271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 38181773 - 38181861
Alignment:
Q  180 ttataagcaaaaa-caaacttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaa 267  Q
    ||||||||||||| |||  ||||||||||||| |||||||||||||| |||   |||||| | |||| ||| |||||| ||| ||||||    
T  38181773 ttataagcaaaaatcaatattttagattcattcattaaatgatgtatgtgatctacaataaagactatatacatcattaattgaatgaa 38181861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 40363274 - 40363230
Alignment:
Q  251 atcatttattcaatgaacctaaaaa-ttgttttttacttataata 294  Q
    ||||||||||||||||||||||||| | ||||||| |||||||||    
T  40363274 atcatttattcaatgaacctaaaaagtagttttttgcttataata 40363230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 44182655 - 44182533
Alignment:
Q  173 gtcactgttataagcaaaaacaaactttt-agattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaaccta 271  Q
    |||||| |||||| | ||||||||||||| | ||||||| | |||||||||||||||    ||||||   |||  ||| ||||||||||||||||| | |    
T  44182655 gtcactattataatcgaaaacaaactttttatattcattgaataaatgatgtatttggtctacaataacgacttgatacatcatttattcaatgaatcaa 44182556  T
Q  272 aaaattgttttttacttataata 294  Q
    ||||||||||||| |||||||||    
T  44182555 aaaattgttttttgcttataata 44182533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 5950328 - 5950275
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  5950328 gtcactattataagcaaaaactaacattttagattcattcattaaatgatgtat 5950275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 3106031 - 3106087
Alignment:
Q  251 atcatttattcaatgaacctaaaaattgttttttacttataatattgatgggaggga 307  Q
    |||||||||| ||||||||||||| |||||||||  |||||||| |||| |||||||    
T  3106031 atcatttattgaatgaacctaaaagttgttttttgtttataatagtgatcggaggga 3106087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 18320260 - 18320294
Alignment:
Q  234 caatataaactaaatatatcatttattcaatgaac 268  Q
    ||||||||||||||||||||||||||| |||||||    
T  18320260 caatataaactaaatatatcatttatttaatgaac 18320294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 35436297 - 35436355
Alignment:
Q  237 tataaactaaatatatcatttattcaatgaacctaaaaa-ttgttttttacttataata 294  Q
    |||| |||| ||| |||| |||||||||||||||||||| | |||||||||||||||||    
T  35436297 tatatactagatacatcaattattcaatgaacctaaaaagtggttttttacttataata 35436355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 2456391 - 2456330
Alignment:
Q  251 atcatttattcaatgaacctaaaaa-ttgttttttacttataatattgatgggagggagtat 311  Q
    |||||| |||||||||||||||||| | | ||||| ||||||||| |||| |||||||||||    
T  2456391 atcattaattcaatgaacctaaaaagtagatttttgcttataatagtgatcggagggagtat 2456330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 2943218 - 2943271
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  2943218 gtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 2943271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 3094425 - 3094490
Alignment:
Q  256 ttattcaatgaacctaaaaa-ttgttttttacttataatattgatgggagggagtatattctttgt 320  Q
    ||||||||||||||| |||| || ||||||||||||||   |||| |||||||||||||| |||||    
T  3094425 ttattcaatgaaccttaaaagttattttttacttataaatgtgatcggagggagtatattttttgt 3094490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 3967753 - 3967700
Alignment:
Q  258 attcaatgaacctaaaaa-ttgttttttacttataatattgatgggagggagta 310  Q
    |||||||||||||||||| | ||||||| ||||||||| |||| ||||||||||    
T  3967753 attcaatgaacctaaaaagtagttttttgcttataatagtgatcggagggagta 3967700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 10095725 - 10095778
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  10095725 gtcactattataagcaaaaattaacattttagattcattcattaaatgatgtat 10095778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 23818430 - 23818483
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  23818430 gtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 23818483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 25245277 - 25245224
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  25245277 gtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 25245224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 27163273 - 27163196
Alignment:
Q  198 ttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaaa 275  Q
    ||||||||||| | | |||||||||||| ||  | | |||||| || | ||| |||||||||||||||||||||||||    
T  27163273 ttttagattcactaaataaatgatgtatgtggtttataatatagaccacatacatcatttattcaatgaacctaaaaa 27163196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 43103078 - 43103131
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||  ||| ||||| ||||||||||||||||||||||    
T  43103078 gtcactattataagcaaaaattaacattttaaattcatttattaaatgatgtat 43103131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 3967790 - 3967834
Alignment:
Q  251 atcatttattcaatgaacctaaaaa-ttgttttttacttataata 294  Q
    ||||||||||||||||||||||||| | ||||||| |||||||||    
T  3967790 atcatttattcaatgaacctaaaaagtagttttttgcttataata 3967834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 34478369 - 34478313
Alignment:
Q  173 gtcactgttataagcaaaaacaaactttt-agattcatttattaaatgatgtatttg 228  Q
    |||||| |||||||||||||  || |||| ||||||||||| |||||||||||||||    
T  34478369 gtcactattataagcaaaaattaattttttagattcatttactaaatgatgtatttg 34478313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 40800114 - 40800146
Alignment:
Q  243 ctaaatatatcatttattcaatgaacctaaaaa 275  Q
    ||||||| |||||||||||||||||||||||||    
T  40800114 ctaaatacatcatttattcaatgaacctaaaaa 40800146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 55935994 - 55936046
Alignment:
Q  173 gtcactgttataagcaaaaacaaacttttagattcatttattaaatgatgtat 225  Q
    |||||| ||||||||||||||| | ||||||||||||| ||||||||||||||    
T  55935994 gtcactattataagcaaaaacataattttagattcattcattaaatgatgtat 55936046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 2324639 - 2324680
Alignment:
Q  233 acaatataaactaaatatatcatttattcaatgaacctaaaa 274  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  2324639 acaatgtaaactaaatatattatttattcaatgaacctaaaa 2324680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 23568514 - 23568461
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  23568514 gtcactattataagcaaaaactaacattttagattcattcattaaatgatgtat 23568461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 46462412 - 46462489
Alignment:
Q  198 ttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaaa 275  Q
    ||||||||||||| | |||||||||||| ||  | | |||| | |||| ||| |||||||||||||||||||||||||    
T  46462412 ttttagattcattaaataaatgatgtatatggtttataataaagactacatacatcatttattcaatgaacctaaaaa 46462489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 21224692 - 21224743
Alignment:
Q  173 gtcactgttataagcaaaaacaaacttttagattcatttattaaatgatgta 224  Q
    |||||| |||||||||||||| ||  |||||||||||| |||||||||||||    
T  21224692 gtcactattataagcaaaaactaaaatttagattcattcattaaatgatgta 21224743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 43616278 - 43616224
Alignment:
Q  174 tcactgttataagcaaaaa-caaacttttagattcatttattaaatgatgtattt 227  Q
    ||||| ||||||||||||| |||  ||||| ||||||||||||||||||||||||    
T  43616278 tcactattataagcaaaaatcaattttttaaattcatttattaaatgatgtattt 43616224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 24448797 - 24448704
Alignment:
Q  174 tcactgttataagcaaaaacaaacttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaa 267  Q
    ||||| ||||||| |||||  |||||||| ||||||| |||||||||||||| ||| | | |||| | |||| ||| |||||| ||| ||||||    
T  24448797 tcactattataaggaaaaatcaacttttacattcattaattaaatgatgtatgtgatttataataaagactatatacatcattaattaaatgaa 24448704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 25700489 - 25700566
Alignment:
Q  198 ttttagattcatttattaaatgatgtatttgactaacaatataaactaaatatatcatttattcaatgaacctaaaaa 275  Q
    ||||||||||||| | |||||||||||| |||   |||||||| || | ||| |||||||||| |||||| |||||||    
T  25700489 ttttagattcattcagtaaatgatgtatgtgatctacaatatagaccacatacatcatttattgaatgaatctaaaaa 25700566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 55934646 - 55934699
Alignment:
Q  173 gtcactgttataagcaaaaacaaac-ttttagattcatttattaaatgatgtat 225  Q
    |||||| |||||||||||| | ||| ||||||||||||| ||||||||||||||    
T  55934646 gtcactattataagcaaaacctaacattttagattcattcattaaatgatgtat 55934699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 55936121 - 55936068
Alignment:
Q  173 gtcactgttataagcaaaaa-caaacttttagattcatttattaaatgatgtat 225  Q
    |||||| ||||||||||||| |||  ||||||||||||| ||||||||||||||    
T  55936121 gtcactattataagcaaaaatcaatattttagattcattcattaaatgatgtat 55936068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 11045718 - 11045678
Alignment:
Q  235 aatataaactaaatatatcatttattcaatgaacctaaaaa 275  Q
    |||||| ||||||||||| | ||||||||||||||||||||    
T  11045718 aatatagactaaatatattagttattcaatgaacctaaaaa 11045678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 11047566 - 11047526
Alignment:
Q  235 aatataaactaaatatatcatttattcaatgaacctaaaaa 275  Q
    |||||| ||||||||||| | ||||||||||||||||||||    
T  11047566 aatatagactaaatatattagttattcaatgaacctaaaaa 11047526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 140722 - 140762
Alignment:
Q  236 atataaactaaatatatcatttattcaatgaacctaaaaat 276  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  140722 atataaactaaatacatcgtttattcaatgaacctaaaaat 140762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 39236 - 39190
Alignment:
Q  180 ttataagcaaaaa-caaacttttagattcatttattaaatgatgtat 225  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||||||    
T  39236 ttataagcaaaaatcaaaattttagattcattcattaaatgatgtat 39190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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