View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_3 (Length: 609)
Name: NF2441_low_3
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 94 - 583
Target Start/End: Original strand, 36428686 - 36429175
Alignment:
| Q |
94 |
tggagctggtggacaatcaatgatttctggtattttgaatcttttaccttttggtgtagtgaaaccatcacttgaacaaatattttcttcgttaacctcc |
193 |
Q |
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| T |
36428686 |
tggagctggtggacaatcaatgatttctggtattttgaatcttttaccttttggtgtagtgaaaccatcactcgaacaaatattttcttcgttaacctcc |
36428785 |
T |
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| Q |
194 |
tcaacattagtagtagtactctcaacttcttctactttcgagcccggagaagtagcatgctcactagaccttttcggtgaattttcctgctttgtttcca |
293 |
Q |
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| T |
36428786 |
tcaacattagtagtagtactctcaacttcttctactttcgagcccggagaagtagcatgctcactagaccttttcggtgaattttcctgctttgtttcca |
36428885 |
T |
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| Q |
294 |
ttggagaccttggtgaagaatttgaatccataaggtaaattcttaaaagggtctcacggctatcaaagaaatttgaaaactgaacacactattttttaga |
393 |
Q |
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| T |
36428886 |
ttggagatcttggtgaagaatttgaatccataaggtaatttcttaaaagggtctcacggctatcaaagaaatttgaaaactgaacacactattttttaga |
36428985 |
T |
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| Q |
394 |
ttggtgagtatatataggcaaattaaattaacaactatgcttggtcactacgaaactaaagtttaatccaaatcctaataaaacctaatccaacttcctc |
493 |
Q |
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| T |
36428986 |
ttggtgagtatatataggcaaattaaattaacaactatgcttggtcactacgaaactaaagtttaatccaaatcctaataaaacctaatccaacttcctc |
36429085 |
T |
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| Q |
494 |
tagaaaaacctaagccaactttttccatctatcaattaattggaaactcacttctcactcgaggttatatattaatgtgtaaccctaccg |
583 |
Q |
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| T |
36429086 |
tagaaaaacctaagccaactttttccatctatcaattaattggaaactcacttctcactcgaggttatatattaatgtgtaaccctaccg |
36429175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 36308391 - 36308472
Alignment:
| Q |
121 |
tggtattttgaatcttttaccttttggtgtagtgaaaccatcacttgaacaaatattttcttcgttaacctcctcaacatta |
202 |
Q |
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| T |
36308391 |
tggtattttgaatcttctaccctttggtgtaatgaagccatcacttgaacaaatattttcatcatcaacgtcctctacatta |
36308472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 36309902 - 36309956
Alignment:
| Q |
129 |
tgaatcttttaccttttggtgtagtgaa---accatcacttgaacaaatattttc |
180 |
Q |
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| T |
36309902 |
tgaatattttaccctttggtgtagtgaagccatcatcacttgaacaaatattttc |
36309956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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