View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_34 (Length: 287)
Name: NF2441_low_34
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_34 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 36 - 287
Target Start/End: Complemental strand, 7917351 - 7917100
Alignment:
| Q |
36 |
tggtgggtagataatacttaccttagaaattaatttttgagtgaaattctataatgagatgatagttcattttaagattaattgtgttgtgtgctattca |
135 |
Q |
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| T |
7917351 |
tggtgggtacgtaatacttaccttagaaattaatttttgagtgaaattctataatgagatcatagttcattttaagattaattgtgttgtgtgctattca |
7917252 |
T |
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| Q |
136 |
gtcaccactattggactacggagattacgtttcagatgtctaataattagcgtaatggttaatgctaagagttagacattgaataaaacatgcatgacaa |
235 |
Q |
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| T |
7917251 |
gtcaccactattggactacggagattacgtttcagatgtctaataattagcgtaatggttaatgctaagagttagacattgaataaaatatgcatgacaa |
7917152 |
T |
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| Q |
236 |
ttaatttataagtaatagatattgtattatgtccaactcaaattttaagatt |
287 |
Q |
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| T |
7917151 |
ttaatttataagtaatagatattgaattatgtccaactcaaattttaagatt |
7917100 |
T |
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