View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_36 (Length: 284)
Name: NF2441_low_36
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 37704512 - 37704454
Alignment:
| Q |
221 |
aaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704512 |
aaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
37704454 |
T |
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Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 37698694 - 37698636
Alignment:
| Q |
221 |
aaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
279 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
37698694 |
aaaataagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt |
37698636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 37699033 - 37698974
Alignment:
| Q |
221 |
aaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
278 |
Q |
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||||||||||||||| ||||||||| |||| |||||||||||||| |||| |||||||| |
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| T |
37699033 |
aaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 37437579 - 37437520
Alignment:
| Q |
220 |
taaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
279 |
Q |
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||||| ||||||||| |||||| |||||| |||||||||||||||||| ||||||||| |
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| T |
37437579 |
taaaacaagggaatagctagactgaatttgtaaacaatctaataagtcagactttttggt |
37437520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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