View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2441_low_4 (Length: 533)

Name: NF2441_low_4
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2441_low_4
NF2441_low_4
[»] scaffold0006 (3 HSPs)
scaffold0006 (38-440)||(79691-80091)
scaffold0006 (271-316)||(130275-130320)
scaffold0006 (134-191)||(130416-130473)
[»] scaffold0783 (1 HSPs)
scaffold0783 (38-237)||(5253-5452)
[»] chr1 (9 HSPs)
chr1 (116-206)||(13626766-13626856)
chr1 (91-188)||(19153506-19153603)
chr1 (357-440)||(13701408-13701491)
chr1 (271-316)||(13601618-13601663)
chr1 (134-191)||(13601759-13601816)
chr1 (389-440)||(13480145-13480196)
chr1 (357-420)||(14316546-14316609)
chr1 (370-417)||(20575489-20575536)
chr1 (38-74)||(20575850-20575886)
[»] scaffold0069 (1 HSPs)
scaffold0069 (269-316)||(425-472)


Alignment Details
Target: scaffold0006 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 38 - 440
Target Start/End: Original strand, 79691 - 80091
Alignment:
Q  38 ccaagtttcaaacatatatcgtctctgattcatacaagggtcttgcataccctagggtttttcaaaataagaagtgcaaatagagaaaggaatagaaaaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  79691 ccaagtttcaaacatatatcgtctctgattcatacaagggtcttgcataccctagggtttttcaaaataagaagtgcaaatagagaaaggaatagaaaaa 79790  T
Q  138 acttattggctccttaagtttaagatttaaattctagagtaggaaaatgaagcattcgtcactaaggcttttacgcttctttatcttggtcatgtcattt 237  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  79791 acttattggctccttaagtttaagatttaaattctagagtaggataatgaagcattcgtcactaaggcttttacgcttctttatcttggtcatgtcattt 79890  T
Q  238 nnnnnnnnntatatacatatttgggtgattgagaaggttcacaaaagaatattcaccatcaaatgcctcaataagtttaaaaatatgatgagtatagttg 337  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  79891 --aaaaaaatatatacatatttgggtgattgagaaggttcacaaaagaatattcaccatcaaatgcctcaataagtttaaaaatatgatgagtatagttg 79988  T
Q  338 gataatttgagtcctggattggagtataattttatgtgacctggattgtctgtttattcgtccattattcagtgtttgtgccactgtggaaacgtcgatg 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  79989 gataatttgagtcctggattggagtataattttatgtgacctggattgtctgtttattcgtccattgttcagtgtttgtgccactgtggaaacgtagatg 80088  T
Q  438 atg 440  Q
    |||    
T  80089 atg 80091  T

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Target: scaffold0006; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 130320 - 130275
Alignment:
Q  271 aaggttcacaaaagaatattcaccatcaaatgcctcaataagttta 316  Q
    |||||| ||||| |||||||||||||||||| ||||||||||||||    
T  130320 aaggttaacaaaggaatattcaccatcaaattcctcaataagttta 130275  T

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Target: scaffold0006; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 130473 - 130416
Alignment:
Q  134 aaaaacttattggctccttaagtttaagatttaaattctagagtaggaaaatgaagca 191  Q
    |||||||| ||||||||||||| ||||||  |||||||| |||||||| |||||||||    
T  130473 aaaaacttgttggctccttaagattaagaggtaaattcttgagtaggataatgaagca 130416  T

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Target: scaffold0783 (Bit Score: 188; Significance: 1e-101; HSPs: 1)
Name: scaffold0783
Description:

Target: scaffold0783; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 38 - 237
Target Start/End: Original strand, 5253 - 5452
Alignment:
Q  38 ccaagtttcaaacatatatcgtctctgattcatacaagggtcttgcataccctagggtttttcaaaataagaagtgcaaatagagaaaggaatagaaaaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5253 ccaagtttcaaacatatatcgtctctgattcatacaagggtcttgcataccctagggtttttcaaaataagaagtgcaaatagagaaaggaatggaaaaa 5352  T
Q  138 acttattggctccttaagtttaagatttaaattctagagtaggaaaatgaagcattcgtcactaaggcttttacgcttctttatcttggtcatgtcattt 237  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5353 acttattggctccttaagtttaagatttaaattctagagtaggataatgaagcattcgtcactaaggcttttacgcttcttcatcttggtcatgtcattt 5452  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 13626766 - 13626856
Alignment:
Q  116 aatagagaaaggaatagaaaaaacttattggctccttaagtttaagatttaaattctagagtaggaaaatgaagcattcgtcactaaggct 206  Q
    ||||||| |||||| || |||||||| |||||||||||||||| |||  ||||||||  ||||||| ||||||||| || ||| |||||||    
T  13626766 aatagagcaaggaaaaggaaaaacttgttggctccttaagtttcagaagtaaattctttagtaggataatgaagcactcttcagtaaggct 13626856  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 19153506 - 19153603
Alignment:
Q  91 agggtttttcaaaataagaagtgcaaatagagaaaggaatagaaaaaacttattggctccttaagtttaagatttaaattctagagtaggaaaatgaa 188  Q
    |||||||||||||||||||||  | || |||| ||||||| | |||||||| || |||||||||| ||||||  |||||| | |||||||| ||||||    
T  19153506 agggtttttcaaaataagaagcactaaaagagcaaggaatgggaaaaacttgttcgctccttaagattaagaggtaaattgttgagtaggataatgaa 19153603  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 440
Target Start/End: Complemental strand, 13701491 - 13701408
Alignment:
Q  357 tggagtataattttatgtgacctggattgtctgtttattcgtccattattcagtgtttgtgccactgtggaaacgtcgatgatg 440  Q
    |||||||||| |  ||||| |||||||||||||||| ||| || || ||||||||||||||||  |||||||| || |||||||    
T  13701491 tggagtataagtcaatgtgtcctggattgtctgttttttcctcgatgattcagtgtttgtgccgttgtggaaaggttgatgatg 13701408  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 13601663 - 13601618
Alignment:
Q  271 aaggttcacaaaagaatattcaccatcaaatgcctcaataagttta 316  Q
    |||||| ||||| |||||||||||||||||| ||||||||||||||    
T  13601663 aaggttaacaaaggaatattcaccatcaaattcctcaataagttta 13601618  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 13601816 - 13601759
Alignment:
Q  134 aaaaacttattggctccttaagtttaagatttaaattctagagtaggaaaatgaagca 191  Q
    |||||||| ||||||||||||| ||||||  |||||||| |||||||| |||||||||    
T  13601816 aaaaacttgttggctccttaagattaagaggtaaattcttgagtaggataatgaagca 13601759  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 440
Target Start/End: Original strand, 13480145 - 13480196
Alignment:
Q  389 gtttattcgtccattattcagtgtttgtgccactgtggaaacgtcgatgatg 440  Q
    |||||||||||||| ||||| ||||||||| | ||||||||||| |||||||    
T  13480145 gtttattcgtccatgattcactgtttgtgctattgtggaaacgttgatgatg 13480196  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 420
Target Start/End: Original strand, 14316546 - 14316609
Alignment:
Q  357 tggagtataattttatgtgacctggattgtctgtttattcgtccattattcagtgtttgtgcca 420  Q
    |||||||||| | |||||| |||||||| ||||||||||| || || ||||||||||| |||||    
T  14316546 tggagtataagtctatgtgtcctggattttctgtttattcatcgatgattcagtgtttctgcca 14316609  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 417
Target Start/End: Original strand, 20575489 - 20575536
Alignment:
Q  370 tatgtgacctggattgtctgtttattcgtccattattcagtgtttgtg 417  Q
    |||||| ||||||||||||||||||||||| || ||||||| ||||||    
T  20575489 tatgtgtcctggattgtctgtttattcgtcgatgattcagtatttgtg 20575536  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 20575886 - 20575850
Alignment:
Q  38 ccaagtttcaaacatatatcgtctctgattcatacaa 74  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  20575886 ccaagtttcaaacatatattgtctctgatgcatacaa 20575850  T

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Target: scaffold0069 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 472 - 425
Alignment:
Q  269 agaaggttcacaaaagaatattcaccatcaaatgcctcaataagttta 316  Q
    |||||||| ||||| ||||||||| |||||||||||| ||||||||||    
T  472 agaaggttaacaaaggaatattcatcatcaaatgccttaataagttta 425  T

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