View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_41 (Length: 264)
Name: NF2441_low_41
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 31 - 223
Target Start/End: Complemental strand, 24411923 - 24411731
Alignment:
| Q |
31 |
tcatatatgatgggatgtaaatggttatgtttgcaatttttgtatctttattcttttttgaaccgggttagtgttctaacaaaagccatatttcatcaaa |
130 |
Q |
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| T |
24411923 |
tcatataagataagatgtaaatggttatgtttgcaatttttgtatctttattcttttatgaaccggattagtgttctaacaaaaaccgtatttcatcaaa |
24411824 |
T |
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| Q |
131 |
tacaaaataagtttatactattcaagatacggaaaaaggccaagtttatggtgtcgagggagacgcatcttgtaccatgcataaggtcattta |
223 |
Q |
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| T |
24411823 |
tacaaaataagtttatactattcaagatacggaagaaggccaagtttatggtgtcgagggagacgcatcttgtaccatgcataaggtcattta |
24411731 |
T |
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Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 31 - 222
Target Start/End: Original strand, 24422203 - 24422394
Alignment:
| Q |
31 |
tcatatatgatgggatgtaaatggttatgtttgcaatttttgtatctttattcttttttgaaccgggttagtgttctaacaaaagccatatttcatcaaa |
130 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| || |||||||||||| |
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| T |
24422203 |
tcatataagataagatgtaaatggttatgtttgcaatttttgtatatttattcttttttgaaccgggttagtgtactaacaaaaaccttatttcatcaaa |
24422302 |
T |
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| Q |
131 |
tacaaaataagtttatactattcaagatacggaaaaaggccaagtttatggtgtcgagggagacgcatcttgtaccatgcataaggtcattt |
222 |
Q |
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| T |
24422303 |
tacaaaataagtttatactattcaagatacggaggtaggccaagtctatggagtcgagggagacacatcttgcaccatacataaggtcattt |
24422394 |
T |
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