View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2441_low_44 (Length: 251)

Name: NF2441_low_44
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2441_low_44
NF2441_low_44
[»] chr7 (14 HSPs)
chr7 (11-143)||(22193916-22194048)
chr7 (139-251)||(22191708-22191820)
chr7 (139-251)||(40301948-40302060)
chr7 (139-251)||(22657175-22657287)
chr7 (139-251)||(26812636-26812748)
chr7 (139-251)||(32129703-32129815)
chr7 (139-251)||(36519019-36519131)
chr7 (26-139)||(22659553-22659666)
chr7 (24-139)||(36521135-36521250)
chr7 (24-143)||(32127561-32127680)
chr7 (24-143)||(26814767-26814886)
chr7 (24-117)||(40301220-40301313)
chr7 (209-251)||(35028641-35028683)
chr7 (20-127)||(1940162-1940268)
[»] chr6 (16 HSPs)
chr6 (11-143)||(634370-634502)
chr6 (11-143)||(6377731-6377863)
chr6 (11-143)||(17958599-17958731)
chr6 (139-251)||(632015-632127)
chr6 (139-251)||(17960720-17960832)
chr6 (139-251)||(34839083-34839195)
chr6 (11-143)||(29952327-29952460)
chr6 (139-251)||(24932720-24932832)
chr6 (139-251)||(8219444-8219556)
chr6 (139-246)||(6379959-6380066)
chr6 (24-139)||(8221810-8221925)
chr6 (139-246)||(29427993-29428100)
chr6 (24-139)||(34841115-34841230)
chr6 (24-143)||(18641889-18642008)
chr6 (24-143)||(24916931-24917050)
chr6 (24-143)||(24114750-24114869)
[»] chr5 (17 HSPs)
chr5 (11-143)||(31012330-31012462)
chr5 (139-251)||(31013316-31013428)
chr5 (139-251)||(27406503-27406615)
chr5 (139-251)||(27942994-27943106)
chr5 (139-251)||(30647574-30647686)
chr5 (139-251)||(32976026-32976138)
chr5 (139-251)||(40889398-40889510)
chr5 (139-246)||(25032849-25032956)
chr5 (139-246)||(10569230-10569337)
chr5 (139-246)||(4577499-4577606)
chr5 (24-139)||(32973672-32973787)
chr5 (11-143)||(4579709-4579829)
chr5 (24-139)||(27945260-27945375)
chr5 (24-139)||(40891430-40891545)
chr5 (24-139)||(30646179-30646294)
chr5 (24-139)||(29616839-29616954)
chr5 (11-58)||(21365263-21365310)
[»] chr4 (27 HSPs)
chr4 (11-143)||(2212584-2212716)
chr4 (11-143)||(53181732-53181864)
chr4 (11-143)||(46914778-46914910)
chr4 (139-251)||(46916972-46917084)
chr4 (139-251)||(2214745-2214857)
chr4 (139-251)||(16174476-16174588)
chr4 (139-251)||(28899833-28899945)
chr4 (139-251)||(3532765-3532877)
chr4 (139-251)||(3617910-3618022)
chr4 (139-251)||(8992287-8992399)
chr4 (139-251)||(13111065-13111177)
chr4 (11-143)||(36658136-36658268)
chr4 (24-139)||(3530577-3530692)
chr4 (24-139)||(3615566-3615681)
chr4 (24-139)||(8994392-8994507)
chr4 (24-139)||(13113170-13113285)
chr4 (139-238)||(36657018-36657117)
chr4 (139-246)||(53183566-53183673)
chr4 (145-246)||(19409580-19409681)
chr4 (24-137)||(28900629-28900742)
chr4 (139-246)||(12158630-12158736)
chr4 (24-139)||(16172169-16172284)
chr4 (11-143)||(34434838-34434970)
chr4 (24-143)||(28446879-28446998)
chr4 (25-143)||(33606687-33606805)
chr4 (210-246)||(53347593-53347629)
chr4 (24-57)||(36564743-36564776)
[»] chr3 (38 HSPs)
chr3 (11-143)||(17469116-17469248)
chr3 (11-143)||(25788009-25788141)
chr3 (11-143)||(25829966-25830098)
chr3 (11-143)||(33935877-33936009)
chr3 (11-143)||(42598664-42598796)
chr3 (11-143)||(47146973-47147105)
chr3 (139-251)||(17467015-17467127)
chr3 (139-251)||(25790237-25790349)
chr3 (139-249)||(47144668-47144778)
chr3 (139-251)||(43474389-43474501)
chr3 (139-251)||(30417886-30417998)
chr3 (139-251)||(42561402-42561514)
chr3 (139-251)||(6048152-6048264)
chr3 (139-251)||(33749181-33749293)
chr3 (139-251)||(50017492-50017604)
chr3 (139-246)||(28154411-28154518)
chr3 (140-251)||(30691877-30691988)
chr3 (139-241)||(49028055-49028157)
chr3 (24-139)||(43475097-43475212)
chr3 (142-245)||(50034058-50034161)
chr3 (139-246)||(25832194-25832301)
chr3 (139-246)||(42600975-42601082)
chr3 (24-139)||(6045650-6045765)
chr3 (24-139)||(10424974-10425089)
chr3 (24-139)||(30415778-30415893)
chr3 (24-139)||(42563616-42563731)
chr3 (139-246)||(51427596-51427703)
chr3 (141-247)||(21225792-21225898)
chr3 (55-143)||(51429574-51429662)
chr3 (24-139)||(4874420-4874535)
chr3 (24-143)||(26157417-26157536)
chr3 (25-139)||(33188387-33188501)
chr3 (20-143)||(30689139-30689262)
chr3 (57-143)||(50019698-50019784)
chr3 (11-143)||(21227816-21227948)
chr3 (65-139)||(4852727-4852801)
chr3 (11-41)||(50019788-50019818)
chr3 (11-41)||(51429664-51429694)
[»] chr2 (21 HSPs)
chr2 (11-143)||(9073221-9073353)
chr2 (11-143)||(12857579-12857711)
chr2 (11-143)||(30819918-30820050)
chr2 (11-143)||(8854699-8854831)
chr2 (139-251)||(8852556-8852668)
chr2 (139-251)||(12855518-12855630)
chr2 (139-251)||(7587959-7588071)
chr2 (139-251)||(30822039-30822151)
chr2 (139-251)||(22351070-22351182)
chr2 (139-246)||(5146181-5146288)
chr2 (139-246)||(2780258-2780365)
chr2 (11-142)||(31185544-31185675)
chr2 (20-143)||(5145682-5145805)
chr2 (24-139)||(7585851-7585966)
chr2 (11-143)||(4278769-4278901)
chr2 (20-142)||(31205267-31205390)
chr2 (139-245)||(39433453-39433558)
chr2 (142-245)||(40881203-40881305)
chr2 (55-137)||(2779425-2779507)
chr2 (181-246)||(31192511-31192576)
chr2 (207-251)||(6363426-6363470)
[»] chr1 (26 HSPs)
chr1 (11-143)||(31470888-31471020)
chr1 (11-143)||(45241740-45241872)
chr1 (139-251)||(31468626-31468738)
chr1 (11-143)||(17785945-17786077)
chr1 (139-251)||(48404829-48404941)
chr1 (139-251)||(2477785-2477897)
chr1 (139-251)||(10266418-10266530)
chr1 (139-251)||(17680722-17680834)
chr1 (139-251)||(36231004-36231116)
chr1 (139-251)||(45239639-45239751)
chr1 (139-251)||(47299958-47300070)
chr1 (139-251)||(48387564-48387676)
chr1 (139-251)||(51520693-51520805)
chr1 (139-246)||(17783868-17783975)
chr1 (139-246)||(33164937-33165044)
chr1 (139-251)||(8468818-8468933)
chr1 (24-143)||(47297866-47297985)
chr1 (24-144)||(8470931-8471051)
chr1 (24-139)||(2475441-2475556)
chr1 (24-139)||(17676628-17676743)
chr1 (24-139)||(48385497-48385612)
chr1 (24-139)||(48407022-48407137)
chr1 (32-143)||(18318078-18318189)
chr1 (24-139)||(38837005-38837120)
chr1 (11-143)||(51522942-51523074)
chr1 (24-143)||(33166889-33167008)
[»] chr8 (22 HSPs)
chr8 (12-143)||(35101097-35101228)
chr8 (11-143)||(5213485-5213617)
chr8 (11-143)||(13816739-13816871)
chr8 (139-251)||(35099932-35100044)
chr8 (12-143)||(26749200-26749331)
chr8 (139-251)||(15054134-15054246)
chr8 (139-251)||(1634279-1634391)
chr8 (139-251)||(38206452-38206564)
chr8 (139-251)||(1957679-1957791)
chr8 (139-246)||(17742209-17742316)
chr8 (139-246)||(30532006-30532113)
chr8 (24-139)||(15056253-15056368)
chr8 (140-246)||(5212785-5212891)
chr8 (139-245)||(13815442-13815548)
chr8 (139-251)||(7511534-7511646)
chr8 (24-139)||(1955601-1955716)
chr8 (24-143)||(38205538-38205657)
chr8 (24-143)||(30529944-30530063)
chr8 (20-139)||(17744276-17744395)
chr8 (163-246)||(13784114-13784197)
chr8 (11-93)||(5735767-5735849)
chr8 (15-53)||(27392271-27392309)
[»] scaffold1240 (2 HSPs)
scaffold1240 (11-143)||(17-149)
scaffold1240 (139-240)||(2229-2330)
[»] scaffold0100 (1 HSPs)
scaffold0100 (139-246)||(30006-30112)
[»] scaffold0021 (1 HSPs)
scaffold0021 (24-143)||(110521-110640)
[»] scaffold0004 (1 HSPs)
scaffold0004 (24-143)||(105478-105597)
[»] scaffold0007 (2 HSPs)
scaffold0007 (139-244)||(169987-170092)
scaffold0007 (55-143)||(166670-166758)
[»] scaffold0362 (1 HSPs)
scaffold0362 (202-251)||(4860-4909)


Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 22194048 - 22193916
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22194048 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 22193949  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  22193948 attatatgagcaaaataataaataaatggattg 22193916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 22191820 - 22191708
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  22191820 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaacctgagggaagtggatctagtacaccgcaaccatactcgaccgag 22191721  T
Q  239 gtgttacccactt 251  Q
    |||||||| ||||    
T  22191720 gtgttaccaactt 22191708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 40301948 - 40302060
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  40301948 gattgtcgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacgccgcaaccatactcgaccgag 40302047  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  40302048 gtgttacccactt 40302060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 22657287 - 22657175
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22657287 gattgttgaggatgaattagatacatatgctcaatgttggaccgattttgagcaatctgagggaagtggatctagtacaccgcaaccatactcgaccgag 22657188  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  22657187 gtgttacccactt 22657175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 26812748 - 26812636
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||||    
T  26812748 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtgaatccagtacaccgcaaccatactccaccgag 26812649  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  26812648 gtgttacccactt 26812636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 32129703 - 32129815
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||| ||||||    
T  32129703 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgatggaagtgaatccagtacaccgcaaccatactccaccgag 32129802  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  32129803 gtgttacccactt 32129815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 36519131 - 36519019
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||    
T  36519131 gattgttgaggatgaacgagatacatatgctcaacattggaccgattttgagcaatccgagggaagtggatctagtacatcacaaccatactcgaccgag 36519032  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  36519031 gtgttacccactt 36519019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 22659666 - 22659553
Alignment:
Q  26 tattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaaaa 125  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||||||||     
T  22659666 tattggggtaaaattgttgagtattttaatgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgagcaaat 22659567  T
Q  126 taataaataaatgg 139  Q
    ||||||||||||||    
T  22659566 taataaataaatgg 22659553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 36521250 - 36521135
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  36521250 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 36521151  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  36521150 attaataaataaatgg 36521135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 32127561 - 32127680
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| ||||||||| |||||| ||||||||||| || |||| || ||| || |||| |||||||||||||||||||||||||||||    
T  32127561 catattggggtaaaattgctgagtattgcaatgagcattgctcattcgatcctccgcgtgatataattgcttgccgaaaccgttttaattatatgagcaa 32127660  T
Q  124 aataataaataaatggattg 143  Q
    | ||||||||||||||||||    
T  32127661 agtaataaataaatggattg 32127680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 26814886 - 26814767
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| | ||||||| |||||| ||||||||||| |  |||| || ||| || |||| |||||||||||||||||||||||||||||    
T  26814886 catattggggtaaaattgctaagtattgcaatgagcattgctcattcgaccctccgcgtgatataattgcttgccgaaaccgttttaattatatgagcaa 26814787  T
Q  124 aataataaataaatggattg 143  Q
    | ||||||||||||||||||    
T  26814786 agtaataaataaatggattg 26814767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 40301220 - 40301313
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatat 117  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| |||||||  ||||| ||||||| |||||||||| ||||||||||||    
T  40301220 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgattctccgtgcgatgtagttgcatgccgaaaccattttaattatat 40301313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 35028641 - 35028683
Alignment:
Q  209 tctagtacacagcaaccatactcgaccgaggtgttacccactt 251  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  35028641 tctaatacacagcaaccatactcgaccgaggtgttacccactt 35028683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 1940162 - 1940268
Alignment:
Q  20 gaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatga 119  Q
    ||||||||||| |||| ||||||||||| | |||||||| |||  |||||| || |||| ||||||  |||||  || |||||||||||||||||||||     
T  1940162 gaaacatattgaggtagaattgttgagtgt-gtaatgagcatttatcattcgatcctccgcgcgatgaagttgaatgtcgaaaccgttttaattatatgt 1940260  T
Q  120 gcaaaata 127  Q
     |||||||    
T  1940261 acaaaata 1940268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 634502 - 634370
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  634502 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 634403  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  634402 attatatgagcaaaataataaataaatggattg 634370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 6377731 - 6377863
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6377731 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 6377830  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  6377831 attatatgagcaaaataataaataaatggattg 6377863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 17958599 - 17958731
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17958599 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 17958698  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  17958699 attatatgagcaaaataataaataaatggattg 17958731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 632127 - 632015
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  632127 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 632028  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  632027 gtgttacccactt 632015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 17960720 - 17960832
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  17960720 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacagcacaaccatactcgaccgag 17960819  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  17960820 gtgttacccactt 17960832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 34839195 - 34839083
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||    
T  34839195 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatccgagggaagtggatctagtacagcacaaccatactcgaccgag 34839096  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  34839095 gtgttacccactt 34839083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 29952327 - 29952460
Alignment:
Q  11 cagagaggagaaacatatt-ggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttt 109  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||||| |||| |||||||||||||||||  |||||||||||||||    
T  29952327 cagagaggagaaacatattaggggtaaatttgctgagtattgtaatgaatattgctcatttaattatccccgcgatctagttgtatgccgaaaccgtttt 29952426  T
Q  110 aattatatgagcaaaataataaataaatggattg 143  Q
    ||||||||||||||| ||||||||||||||||||    
T  29952427 aattatatgagcaaagtaataaataaatggattg 29952460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 24932720 - 24932832
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||| ||||||||||||||    
T  24932720 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtgaatccaatacactgcaatcatactcgaccgag 24932819  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  24932820 gtgttacccactt 24932832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 8219556 - 8219444
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||| |||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  8219556 gattgttgaggatgaacgaaatacatatgctcaacgttggaaagattttgagcaatttgagggaagtggatctagtacaccgcagccatactcgaccgag 8219457  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  8219456 gtgttacccactt 8219444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 6379959 - 6380066
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| ||||||  |||||||||||||||||||    
T  6379959 gattgttgaggatgaacgagatacatatgctcaacgttggactgattttgagcaacctgggggaagtggatcaagtacatcgcaaccatactcgaccgag 6380058  T
Q  239 gtgttacc 246  Q
    ||||||||    
T  6380059 gtgttacc 6380066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 8221925 - 8221810
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| |||||| ||||||| ||||| |||||||||||||||||||||||    
T  8221925 catattggggtaaaattgctgagtattgtaatgagaattgctcattcgattctccgcgcgatgtagttgcatgccgcaaccgttttaattatatgagcaa 8221826  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  8221825 attaataaataaatgg 8221810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 29427993 - 29428100
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||||    
T  29427993 gattgttgaggatgaacgagatgcatatgcttaacgttggaccgattttgagcaacctgggggaagtggatctaatacaccgcaaccatactcgaccgag 29428092  T
Q  239 gtgttacc 246  Q
    ||||||||    
T  29428093 gtgttacc 29428100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 34841230 - 34841115
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  34841230 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 34841131  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  34841130 attaataaataaatgg 34841115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 18642008 - 18641889
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| || |||| || ||| || |||| |||||||||| ||||||||||||||||||    
T  18642008 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgatcctccgcgtgatgtaattgcttgccgaaaccattttaattatatgagcaa 18641909  T
Q  124 aataataaataaatggattg 143  Q
    | ||||||||||||||||||    
T  18641908 agtaataaataaatggattg 18641889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 24916931 - 24917050
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| ||||||||| |||||| ||||||||||| || |||| || ||| || |||| |||||||||| ||||||||||||||||||    
T  24916931 catattggggtaaaattgctgagtattgcaatgagcattgctcattcgatcctccgcgtgatataattgcttgccgaaaccattttaattatatgagcaa 24917030  T
Q  124 aataataaataaatggattg 143  Q
    | ||||||||||||||||||    
T  24917031 agtaataaataaatggattg 24917050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 24114869 - 24114750
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||||||| ||| ||||||| ||||| | | |||| || |||| |||| ||||||||||||||||||||||||    
T  24114869 catattggggtaaaattgctgagtattgtaatgagcattactcattcgattctgcgctcgatgtaattgcatgccaaaaccgttttaattatatgagcaa 24114770  T
Q  124 aataataaataaatggattg 143  Q
    ||||   |||||||||||||    
T  24114769 aataccgaataaatggattg 24114750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 31012330 - 31012462
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31012330 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 31012429  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  31012430 attatatgagcaaaataataaataaatggattg 31012462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 31013316 - 31013428
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31013316 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 31013415  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  31013416 gtgttacccactt 31013428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 27406503 - 27406615
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  27406503 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgaggaaagtggatctagtacaccgcaaccatactcgaccgag 27406602  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  27406603 gtgttacccactt 27406615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 27943106 - 27942994
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  27943106 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacagcacaaccatactcgaccgag 27943007  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  27943006 gtgttacccactt 27942994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 30647574 - 30647686
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  30647574 gattgttgaggatgaacgagatacatatgctcaacgttggattgattttgagcaatctgagggaagtggatccagtacaccgcaaccatactcgaccgag 30647673  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  30647674 gtgttacccactt 30647686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 32976026 - 32976138
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||    
T  32976026 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatccgagggaagtggatctagtacagcacaaccatactcgaccgag 32976125  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  32976126 gtgttacccactt 32976138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 40889510 - 40889398
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||    
T  40889510 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatccgagggaagtggatctagtacagcacaaccatactcgaccgag 40889411  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  40889410 gtgttacccactt 40889398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 25032956 - 25032849
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  25032956 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaacctgggggaagtggatctagtacaccgcaaccatactcgaccgag 25032857  T
Q  239 gtgttacc 246  Q
    ||||||||    
T  25032856 gtgttacc 25032849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 10569230 - 10569337
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| ||||||     
T  10569230 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaacctgggggaagtggatctagtacactgcaaccatacttgaccgat 10569329  T
Q  239 gtgttacc 246  Q
    ||||||||    
T  10569330 gtgttacc 10569337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 4577606 - 4577499
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| ||||||  |||||||||||||||||||    
T  4577606 gattgttgaggatgaacgagatacatatgctcaacgttggactgattttgagcaacctgggggaagtggatcaagtacatcgcaaccatactcgaccgag 4577507  T
Q  239 gtgttacc 246  Q
    ||||||||    
T  4577506 gtgttacc 4577499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 32973672 - 32973787
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  32973672 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgattctccgcgcgatatagttgcatgccgaaaccgttttaattatatgaacaa 32973771  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  32973772 attaataaataaatgg 32973787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 4579829 - 4579709
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| ||||||||||            |||||| ||||||||||||||||||||| |||||||||||||||||    
T  4579829 cagagaggagaaacatattggggtaaaattgctgagtattgt------------tcattcgattctccccgcgatctagttgtctgccgaaaccgtttta 4579742  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  4579741 attatatgagcaaaataataaataaatggattg 4579709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 27945375 - 27945260
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  27945375 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 27945276  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  27945275 attaataaataaatgg 27945260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 40891545 - 40891430
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  40891545 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 40891446  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  40891445 attaataaataaatgg 40891430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 30646179 - 30646294
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| | |||| ||||||| ||||||||| |||||||||||||||||||    
T  30646179 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgattctccgctcgatgtagttgcatgccgaaactgttttaattatatgagcaa 30646278  T
Q  124 aataataaataaatgg 139  Q
    |  |||||||||||||    
T  30646279 atgaataaataaatgg 30646294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 29616839 - 29616954
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||| ||||||||||  |||||||||||| ||| |||| |||||| |||||||  ||||| ||||||| ||||||||||||||||||||||||| |||    
T  29616839 catatttgggtaaaattcctgagtattgtaacgagcattgatcattcgattctccgtgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 29616938  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  29616939 attaataaataaatgg 29616954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 21365310 - 21365263
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgag 58  Q
    |||| ||| |||||||||||||||||||||| ||||||||||||||||    
T  21365310 cagataggtgaaacatattggggtaaaattgctgagtattgtaatgag 21365263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 2212584 - 2212716
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2212584 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 2212683  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  2212684 attatatgagcaaaataataaataaatggattg 2212716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 53181732 - 53181864
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  53181732 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 53181831  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  53181832 attatatgagcaaaataataaataaatggattg 53181864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 46914778 - 46914910
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  46914778 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaactgtttta 46914877  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  46914878 attatatgagcaaaataataaataaatggattg 46914910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 46916972 - 46917084
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46916972 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 46917071  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  46917072 gtgttacccactt 46917084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 2214745 - 2214857
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2214745 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgactgag 2214844  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  2214845 gtgttacccactt 2214857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 16174476 - 16174588
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16174476 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacaccgcaaccatactcgaccgag 16174575  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  16174576 gtgttacccactt 16174588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 28899945 - 28899833
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28899945 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacaccgcaaccatactcgaccgag 28899846  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  28899845 gtgttacccactt 28899833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 3532765 - 3532877
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  3532765 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacagcgcaaccatactcgaccgag 3532864  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  3532865 gtgttacccactt 3532877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 3617910 - 3618022
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  3617910 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacagcacaaccatactcgaccgag 3618009  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  3618010 gtgttacccactt 3618022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 8992399 - 8992287
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  8992399 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacagcacaaccatactcgaccgag 8992300  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  8992299 gtgttacccactt 8992287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 13111177 - 13111065
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  13111177 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacagcacaaccatactcgaccgag 13111078  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  13111077 gtgttacccactt 13111065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 36658268 - 36658136
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||  |||||||||| ||||||||||| ||| ||||||||||||    
T  36658268 cagagaggaaaaacatattggggtaaaattgctgagtattgtaatgagtgttgctcatttgattctccccgggatctagttgcatgcagaaaccgtttta 36658169  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||| ||||||||||||||||||    
T  36658168 attatatgagcaaagtaataaataaatggattg 36658136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 3530577 - 3530692
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  3530577 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 3530676  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  3530677 attaataaataaatgg 3530692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 3615566 - 3615681
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  3615566 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 3615665  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  3615666 attaataaataaatgg 3615681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 8994507 - 8994392
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  8994507 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 8994408  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  8994407 attaataaataaatgg 8994392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 13113285 - 13113170
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  13113285 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 13113186  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  13113185 attaataaataaatgg 13113170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 36657117 - 36657018
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||||||| |||||||||||||||||||    
T  36657117 gattgttgaggatgaacgagatacatatgctcaacgttggaccgaatttgagcaacctgggggaaatggatctagtacaccgcaaccatactcgaccgag 36657018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 53183566 - 53183673
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| ||||||  ||||||||||||| |||||    
T  53183566 gattgttgaggatgaacgagatacatatgctcaacgttggactgattttgagcaacctgggggaagtggatcaagtacatcgcaaccatactcggccgag 53183665  T
Q  239 gtgttacc 246  Q
    ||||||||    
T  53183666 gtgttacc 53183673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 19409681 - 19409580
Alignment:
Q  145 tgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgaggtgtta 244  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||    
T  19409681 tgaggatgaacgaggtacatatgctcaacgttagaccgattttgagcaacctgggggaagtggatctagtacaccgcaaccatactcgaccgaggcgtta 19409582  T
Q  245 cc 246  Q
    ||    
T  19409581 cc 19409580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 28900742 - 28900629
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||  | ||| ||||||| |||||||||| ||||||||||||||||||    
T  28900742 catattggggtaaaattgttgagtattgtaatgagcattgctcattcgattctccgtgtgatgtagttgcatgccgaaaccattttaattatatgagcaa 28900643  T
Q  124 aataataaataaat 137  Q
    | ||||||||||||    
T  28900642 attaataaataaat 28900629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 12158736 - 12158630
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  |||||||||||||||| ||    
T  12158736 gattgttgaggataaacgagatacatatgctcaacgttggaccgattttgagcaacctg-gggaagtggatctagtacatcgcaaccatactcgaccaag 12158638  T
Q  239 gtgttacc 246  Q
    ||| ||||    
T  12158637 gtgctacc 12158630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 16172169 - 16172284
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| |||||| ||||||| ||||||||||| | |||| ||||||||||    
T  16172169 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccggtataataatatgagcaa 16172268  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  16172269 attaataaataaatgg 16172284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 34434838 - 34434970
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    |||| ||| ||| |||||||||||||||||| |||||||||||||||| |||||  |||| || |||| || ||| || |||| ||||||||||||||||    
T  34434838 cagacaggtgaagcatattggggtaaaattgctgagtattgtaatgagcattgcaaattcgatcctccgcgtgatgtaattgcatgccgaaaccgtttta 34434937  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||| ||||||||||||||||||    
T  34434938 attatatgagcaaagtaataaataaatggattg 34434970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 28446998 - 28446879
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| || |||| || | | || |||| ||| |||||||||||||||||||||||||    
T  28446998 catattggggtaaaattgttgagtattgtaatgagcattgctcattcgatcctccacgtggtgtaattgcatgcagaaaccgttttaattatatgagcaa 28446899  T
Q  124 aataataaataaatggattg 143  Q
    |||| |  ||||||||||||    
T  28446898 aatactgtataaatggattg 28446879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 33606805 - 33606687
Alignment:
Q  25 atattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaaa 124  Q
    |||||||||||||||||||||||||||||||||  ||| ||||||| || |||| || ||| || |||| |||||||| | |||||||||||||||||||    
T  33606805 atattggggtaaaattgttgagtattgtaatgaacattactcattcgatcctccgcgtgatgtaattgcttgccgaaatcattttaattatatgagcaaa 33606706  T
Q  125 ataataaataaatggattg 143  Q
     ||||||||||||||||||    
T  33606705 gtaataaataaatggattg 33606687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 53347593 - 53347629
Alignment:
Q  210 ctagtacacagcaaccatactcgaccgaggtgttacc 246  Q
    ||||||||| |||||||||||||||||||||||||||    
T  53347593 ctagtacaccgcaaccatactcgaccgaggtgttacc 53347629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 36564743 - 36564776
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatga 57  Q
    |||||||||||||||||||||| |||||||||||    
T  36564743 catattggggtaaaattgttgattattgtaatga 36564776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 17469248 - 17469116
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17469248 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 17469149  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  17469148 attatatgagcaaaataataaataaatggattg 17469116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 25788009 - 25788141
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25788009 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 25788108  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  25788109 attatatgagcaaaataataaataaatggattg 25788141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 25829966 - 25830098
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25829966 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 25830065  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  25830066 attatatgagcaaaataataaataaatggattg 25830098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 33936009 - 33935877
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  33936009 cagagaggagaaacatattagggtaaaattgttgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgtttta 33935910  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  33935909 attatatgagcaaaataataaataaatggattg 33935877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 42598664 - 42598796
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  42598664 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgctgaaaccgtttta 42598763  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  42598764 attatatgagcaaaataataaataaatggattg 42598796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 47147105 - 47146973
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  47147105 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtatagctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 47147006  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  47147005 attatatgagcaaaataataaataaatggattg 47146973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 17467127 - 17467015
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17467127 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 17467028  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  17467027 gtgttacccactt 17467015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 25790237 - 25790349
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25790237 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 25790336  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  25790337 gtgttacccactt 25790349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 47144778 - 47144668
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47144778 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 47144679  T
Q  239 gtgttacccac 249  Q
    |||||||||||    
T  47144678 gtgttacccac 47144668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 43474501 - 43474389
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  43474501 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtaaaccgcaaccatactcgaccgag 43474402  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  43474401 gtgttacccactt 43474389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 30417886 - 30417998
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  30417886 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacagcacaaccatactcgaccgag 30417985  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  30417986 gtgttacccactt 30417998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 42561514 - 42561402
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||    
T  42561514 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgatggaagtggatctagtacaccgcaaccatactcgactgag 42561415  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  42561414 gtgttacccactt 42561402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 6048152 - 6048264
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||    
T  6048152 gattgttgaggatgaacgcgatacatatgctcaacgttggaccgattttgagcaatatgagggaagtggatctagtacagcgcaaccatactcgaccgag 6048251  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  6048252 gtgttacccactt 6048264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 33749293 - 33749181
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  33749293 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaacctgggggaagtggatctagtacaccgcaaccatactcgaccgag 33749194  T
Q  239 gtgttacccactt 251  Q
    |||||||| ||||    
T  33749193 gtgttaccaactt 33749181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 50017604 - 50017492
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  50017604 gattgttgaggatgaacgagatacatatgctcaatgttggaccgattttgagcaacctgggggaagtggatctagtacaccgcaaccatactcgaccgag 50017505  T
Q  239 gtgttacccactt 251  Q
    |||||||| ||||    
T  50017504 gtgttaccaactt 50017492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 28154411 - 28154518
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  28154411 gattgttgaggatgaacgagatacataggttcaacgttggaccgattttgagcaacctgagggaagtggatctagtacaccgcaaccatactcgaccgag 28154510  T
Q  239 gtgttacc 246  Q
    ||||||||    
T  28154511 gtgttacc 28154518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 140 - 251
Target Start/End: Original strand, 30691877 - 30691988
Alignment:
Q  140 attgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgagg 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||||||    
T  30691877 attgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaacctgggggaagtggatctagtacaccgcaaccatgctcgaccgagg 30691976  T
Q  240 tgttacccactt 251  Q
    ||||||| ||||    
T  30691977 tgttaccaactt 30691988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 49028055 - 49028157
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||    
T  49028055 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtgaatccagtacaccgcaaccatactcgaccgag 49028154  T
Q  239 gtg 241  Q
    |||    
T  49028155 gtg 49028157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 43475212 - 43475097
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  43475212 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgagcaa 43475113  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  43475112 attaataaataaatgg 43475097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 50034161 - 50034058
Alignment:
Q  142 tgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgaggtg 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  50034161 tgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaacctgggggaagtggatctagcacaccgcaaccatactcgaccgaggtg 50034062  T
Q  242 ttac 245  Q
    ||||    
T  50034061 ttac 50034058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 25832194 - 25832301
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| ||||||  |||||||||||||||||||    
T  25832194 gattgttgaggatgaacgagatacatatgctcaacgttggactgattttgagcaacctgggggaagtggatcaagtacatcgcaaccatactcgaccgag 25832293  T
Q  239 gtgttacc 246  Q
    ||||||||    
T  25832294 gtgttacc 25832301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 42600975 - 42601082
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| ||||||  |||||||||||||||||||    
T  42600975 gattgttgaggatgaacgagatacatatgctcaacgttggactgattttgagcaacctgggggaagtggatcaagtacatcgcaaccatactcgaccgag 42601074  T
Q  239 gtgttacc 246  Q
    ||||||||    
T  42601075 gtgttacc 42601082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 6045650 - 6045765
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  6045650 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 6045749  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  6045750 attaataaataaatgg 6045765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 10424974 - 10425089
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  10424974 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 10425073  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  10425074 attaataaataaatgg 10425089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 30415778 - 30415893
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  30415778 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 30415877  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  30415878 attaataaataaatgg 30415893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 42563731 - 42563616
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  42563731 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 42563632  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  42563631 attaataaataaatgg 42563616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 51427703 - 51427596
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||  |||||  |||||||||||||||||||    
T  51427703 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaaccagcgggaagtggatcacgtacatcgcaaccatactcgaccgag 51427604  T
Q  239 gtgttacc 246  Q
    ||||||||    
T  51427603 gtgttacc 51427596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 141 - 247
Target Start/End: Complemental strand, 21225898 - 21225792
Alignment:
Q  141 ttgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgaggt 240  Q
    ||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||| ||||||||    
T  21225898 ttgttaaggatgaacgagatacttatgctcaacattggaccgattttgagcaatctgaggaaaatggatctagtacaccgcaaccatactcaaccgaggt 21225799  T
Q  241 gttaccc 247  Q
    |||||||    
T  21225798 gttaccc 21225792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 51429662 - 51429574
Alignment:
Q  55 tgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51429662 tgagtattgctcattcgattctccacgcgatctagttgcctgccgaaaccgttttaattatatgaacaaaataataaataaatggattg 51429574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 4874420 - 4874535
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    ||||||||| ||||||||||||||||||||||||| || |||||||| ||||||| |||||   |||||| |||||||||||||||||||||||||||||    
T  4874420 catattgggttaaaattgttgagtattgtaatgagcatcgctcattcgattctccgcgcgactcagttgcatgccgaaaccgttttaattatatgagcaa 4874519  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  4874520 attaataaataaatgg 4874535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 26157417 - 26157536
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| ||||||||| |||||| ||||||||||| || |||| || ||| || |||| |||||||||||||||||||||||||||||    
T  26157417 catattggggtaaaattgctgagtattgcaatgagcattgctcattcgatcctccgcgtgatataattgcttgccgaaaccgttttaattatatgagcaa 26157516  T
Q  124 aataataaataaatggattg 143  Q
    | ||||||||||||||||||    
T  26157517 agtaataaataaatggattg 26157536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 33188387 - 33188501
Alignment:
Q  25 atattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaaa 124  Q
    ||||||||||||||||| |||||||||||||||  |||||| |||| ||||||| ||||||  |||||| ||||||||||||||||||||||||||||||    
T  33188387 atattggggtaaaattgctgagtattgtaatgaacattgctaattcgattctccgcgcgatgcagttgcatgccgaaaccgttttaattatatgagcaaa 33188486  T
Q  125 ataataaataaatgg 139  Q
     ||||||||||||||    
T  33188487 ttaataaataaatgg 33188501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 30689139 - 30689262
Alignment:
Q  20 gaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatga 119  Q
    |||| |||||||||| |||||| ||||||||||||||||||| |||||||  ||||||| || ||||||||||| |||||||| | |||||||||||| |    
T  30689139 gaaatatattggggtgaaattgctgagtattgtaatgagtatggctcatttgattctccgcgggatctagttgcatgccgaaatcattttaattatataa 30689238  T
Q  120 gcaaaataataaataaatggattg 143  Q
    ||||| ||||||||||||||||||    
T  30689239 gcaaagtaataaataaatggattg 30689262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 50019784 - 50019698
Alignment:
Q  57 agtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  50019784 agtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgttttaattatatgaacaaagtaataaataaatggattg 50019698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 21227948 - 21227816
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    |||| ||| |||||||||||||||| ||||||||| |||||||||||| ||||||||||  || |||| | ||||  |||||| || |||||||||| ||    
T  21227948 cagaaaggtgaaacatattggggtagaattgttgattattgtaatgagaattgctcatttgatcctccgcacgatggagttgcatgtcgaaaccgttata 21227849  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    ||||||||| ||||||| ||  |||||||||||    
T  21227848 attatatgaacaaaatactaggtaaatggattg 21227816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 4852727 - 4852801
Alignment:
Q  65 tcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaaaataataaataaatgg 139  Q
    |||||| ||||||| |||||   || ||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  4852727 tcattcgattctccgcgcgactcaggtgcatgccgaaaccgttttaattatatgagcaaattaataaataaatgg 4852801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Complemental strand, 50019818 - 50019788
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattg 41  Q
    |||||||||||||||||||||||||||||||    
T  50019818 cagagaggagaaacatattggggtaaaattg 50019788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Complemental strand, 51429694 - 51429664
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattg 41  Q
    |||||||||||||||||||||||||||||||    
T  51429694 cagagaggagaaacatattggggtaaaattg 51429664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 9073221 - 9073353
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9073221 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 9073320  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  9073321 attatatgagcaaaataataaataaatggattg 9073353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 12857711 - 12857579
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12857711 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 12857612  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  12857611 attatatgagcaaaataataaataaatggattg 12857579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 30819918 - 30820050
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30819918 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 30820017  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  30820018 attatatgagcaaaataataaataaatggattg 30820050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 8854831 - 8854699
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8854831 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 8854732  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||| ||||||||||||||||||||||    
T  8854731 attatatgagtaaaataataaataaatggattg 8854699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 8852668 - 8852556
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8852668 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 8852569  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  8852568 gtgttacccactt 8852556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 12855630 - 12855518
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12855630 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 12855531  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  12855530 gtgttacccactt 12855518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 7587959 - 7588071
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  7587959 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacagcgcaaccatactcgaccgag 7588058  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  7588059 gtgttacccactt 7588071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 30822039 - 30822151
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  30822039 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacagcacaaccatactcgaccgag 30822138  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  30822139 gtgttacccactt 30822151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 22351070 - 22351182
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||    
T  22351070 gattgttgaggatgaacgcgatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacagcgcaaccatactcggccgag 22351169  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  22351170 gtgttacccactt 22351182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 5146181 - 5146288
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  5146181 gattgttgaggataaacgagatacatatgctcaacgttggaccgattttgagcaacctgggggaagtggatctagtacaccgcaaccatactcgaccgag 5146280  T
Q  239 gtgttacc 246  Q
    ||||||||    
T  5146281 gtgttacc 5146288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 2780258 - 2780365
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||  |||||||||||||||||||    
T  2780258 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaacctaggggaattggatctagtacaatgcaaccatactcgaccgag 2780357  T
Q  239 gtgttacc 246  Q
    ||||||||    
T  2780358 gtgttacc 2780365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 31185544 - 31185675
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||| || |||||||||||||||||||||| ||||||||||| ||||||| |||||||  ||||||| || ||||||||||| |||| |||||||||||    
T  31185544 cagaggggtgaaacatattggggtaaaattgatgagtattgtattgagtatggctcatttgattctccgcgggatctagttgcatgccaaaaccgtttta 31185643  T
Q  111 attatatgagcaaaataataaataaatggatt 142  Q
    |||||||||||||| |||||||||||||||||    
T  31185644 attatatgagcaaagtaataaataaatggatt 31185675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 5145682 - 5145805
Alignment:
Q  20 gaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatga 119  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||  || |||| || ||| || |||| |||||||||||||||||||||||||    
T  5145682 gaaacatattggggtaaaattgctgagtattgtaatgagcattgctcatttgatcctccgcgtgatgtaattgcttgccgaaaccgttttaattatatga 5145781  T
Q  120 gcaaaataataaataaatggattg 143  Q
    ||||| ||||||||||||||||||    
T  5145782 gcaaagtaataaataaatggattg 5145805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 7585851 - 7585966
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  7585851 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 7585950  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  7585951 attaataaataaatgg 7585966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 4278901 - 4278769
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| || || | || ||| || |||| ||||||||||||||||    
T  4278901 cagacaggtgaagcatattggggtaaaattgttgagtattgtaatgagcattgctcattcgatccttcgcgtgatgtaattgcatgccgaaaccgtttta 4278802  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||| || |||||||||||||||    
T  4278801 attatatgagcaaagtactaaataaatggattg 4278769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 31205267 - 31205390
Alignment:
Q  20 gaaacatattggggtaaaattgttgagtattg-taatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatg 118  Q
    |||||||||||||||||||||| ||||||||| |||||||||  |||||||  ||||||| || ||||||||||| ||||||||| ||||||||||||||    
T  31205267 gaaacatattggggtaaaattgatgagtattggtaatgagtacggctcatttgattctccgcgggatctagttgcatgccgaaactgttttaattatatg 31205366  T
Q  119 agcaaaataataaataaatggatt 142  Q
    |||||| |||||||||||||||||    
T  31205367 agcaaagtaataaataaatggatt 31205390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 39433453 - 39433558
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||  |||||||||||  ||||||    
T  39433453 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaacctg-gggaagtggatctaatacatcgcaaccatacttaaccgag 39433551  T
Q  239 gtgttac 245  Q
    |||||||    
T  39433552 gtgttac 39433558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 40881203 - 40881305
Alignment:
Q  142 tgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgaggtg 241  Q
    ||||||||||| || ||||| |||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||    
T  40881203 tgttgaggatggacaagatatatatgctcaaagttggaccgattttgagcaacctg-gggaagtggatctagtacaccgcaaccatactcgaccgaggtg 40881301  T
Q  242 ttac 245  Q
    ||||    
T  40881302 ttac 40881305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 2779425 - 2779507
Alignment:
Q  55 tgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaaaataataaataaat 137  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  2779425 tgagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgttttaattatatgagcaaagtaataaataaat 2779507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 31192511 - 31192576
Alignment:
Q  181 cgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgaggtgttacc 246  Q
    ||||||||||||| ||| |||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  31192511 cgattttgagcaacctgggggaagtggatcaagtacaccgcaaccatactcgaccggggtgttacc 31192576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 6363470 - 6363426
Alignment:
Q  207 gatctagtacacagcaaccatactcgaccgaggtgttacccactt 251  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  6363470 gatctagtacaccgcaaccatactcgaccgaggtgttacccactt 6363426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 31471020 - 31470888
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31471020 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 31470921  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  31470920 attatatgagcaaaataataaataaatggattg 31470888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 45241872 - 45241740
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45241872 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 45241773  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  45241772 attatatgagcaaaataataaataaatggattg 45241740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 31468738 - 31468626
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31468738 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 31468639  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  31468638 gtgttacccactt 31468626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 17786077 - 17785945
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| |||||||    
T  17786077 cagagaggagaaacaaattggggtaaaattgctgagtattgtaatgagtattgctcattcgattatccccgcgatctagttgcatgccgaaatcgtttta 17785978  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||| ||||||||||||||||||    
T  17785977 attatatgagcaaagtaataaataaatggattg 17785945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 48404941 - 48404829
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48404941 gattgttgaggatgaacgagatacatatgctcaacgttagaccgattttgagcaatctgagggaagtggatctagtacaccgcaaccatactcgaccgag 48404842  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  48404841 gtgttacccactt 48404829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 2477785 - 2477897
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  2477785 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacagcacaaccatactcgaccgag 2477884  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  2477885 gtgttacccactt 2477897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 10266418 - 10266530
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||    
T  10266418 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacatcgcaaccatactcaaccgag 10266517  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  10266518 gtgttacccactt 10266530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 17680722 - 17680834
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  17680722 gattgttgaggatgaaagagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtagaccgcaaccatactcgaccgag 17680821  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  17680822 gtgttacccactt 17680834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 36231116 - 36231004
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  36231116 gattgttgaggatgaacgagatacatatgctcaacattggaccgattttgagcaatctgagggaagtggatctagtacaccgcaatcatactcgaccgag 36231017  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  36231016 gtgttacccactt 36231004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 45239751 - 45239639
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  45239751 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacagcacaaccatactcgaccgag 45239652  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  45239651 gtgttacccactt 45239639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 47299958 - 47300070
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  47299958 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggttctagtacaccgcaaccatactcgaccgag 47300057  T
Q  239 gtgttacccactt 251  Q
    |||||||| ||||    
T  47300058 gtgttacctactt 47300070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 48387564 - 48387676
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  48387564 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacagcacaaccatactcgaccgag 48387663  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  48387664 gtgttacccactt 48387676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 51520805 - 51520693
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  51520805 gattgttgaggatgaacgagatacatatgatcaacgttggaccgattttgagcaatctaagggaagtggatctagtacaccgcaaccatactcgaccgag 51520706  T
Q  239 gtgttacccactt 251  Q
     ||||||||||||    
T  51520705 atgttacccactt 51520693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 17783975 - 17783868
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  17783975 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctttgggaagtggatctagtacaccgcaaccatactcgaccgag 17783876  T
Q  239 gtgttacc 246  Q
    ||||||||    
T  17783875 gtgttacc 17783868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 33165044 - 33164937
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||||    
T  33165044 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaacctgggggaagtagatctagtacaccgcaaccatactcgaccgag 33164945  T
Q  239 gtgttacc 246  Q
    ||||||||    
T  33164944 gtgttacc 33164937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 8468933 - 8468818
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctga---gggaagtggatctagtacacagcaaccatactcgacc 235  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||||||    
T  8468933 gattgttgaggatgaaccagatacatatgttcaacgttggaccgattttgagcaatctgaggggggaagtggatctagtacaccgcaaccatactcgacc 8468834  T
Q  236 gaggtgttacccactt 251  Q
    ||||||||||||||||    
T  8468833 gaggtgttacccactt 8468818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 47297866 - 47297985
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||| |||||| ||||||| ||||||||| |||||||||||||||||||    
T  47297866 catattggggtaaagttgctgagtattgtaatgagcattgctcattcgattctccacgcgatgtagttgcatgccgaaactgttttaattatatgagcaa 47297965  T
Q  124 aataataaataaatggattg 143  Q
    | ||||||||||||||||||    
T  47297966 attaataaataaatggattg 47297985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 8471051 - 8470931
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||||| ||||||| |||||  ||||||| |||||||||||||||||||||||||||||    
T  8471051 catatttgggtataattgctgagtattgtaatgagtattgctcattcgattctccgcgcgaagtagttgcatgccgaaaccgttttaattatatgagcaa 8470952  T
Q  124 aataataaataaatggattgt 144  Q
    | |||||||||||||| ||||    
T  8470951 attaataaataaatgggttgt 8470931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 2475441 - 2475556
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  2475441 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 2475540  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  2475541 attaataaataaatgg 2475556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 17676628 - 17676743
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||||| ||||||| ||||||  |||||| |||||||||||||||||||||||||||||    
T  17676628 catattggggtaaaattgctgagtattataatgagcattgctcattcgattctccgcgcgatgcagttgcatgccgaaaccgttttaattatatgagcaa 17676727  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  17676728 attaataaataaatgg 17676743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 48385497 - 48385612
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  48385497 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 48385596  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  48385597 attaataaataaatgg 48385612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 48407137 - 48407022
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| ||| || ||||||| ||||||||||||||||||||||||| |||    
T  48407137 catattggggtaaaattgttgagtattgtaacgagcattgctcattcgattctccgcgcaatgtagttgcatgccgaaaccgttttaattatatgaacaa 48407038  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  48407037 attaataaataaatgg 48407022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 18318078 - 18318189
Alignment:
Q  32 ggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaaaataataa 131  Q
    |||||||||||| |||||||||||||| ||||||||||| ||||||| |||||| || |||| ||||||||| ||||||||||||||||||||||| |||    
T  18318078 ggtaaaattgttaagtattgtaatgagcattgctcattcgattctccgcgcgatgtaattgcatgccgaaactgttttaattatatgagcaaaatactaa 18318177  T
Q  132 ataaatggattg 143  Q
    ||||||||||||    
T  18318178 ataaatggattg 18318189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 38837005 - 38837120
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||  || ||| |||| ||||||||||||||||||||||||    
T  38837005 catattggtgtaaaattgctgagtattgtaatgagcattgctcattcaattctccgcgcgatgcagctgcatgccaaaaccgttttaattatatgagcaa 38837104  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  38837105 attaataaataaatgg 38837120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 51523074 - 51522942
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    |||| ||| ||| |||||||||||||||||| |||||||||||||||  |||||| |||| || |||| || ||| || |||| ||||||||||||||||    
T  51523074 cagacaggtgaagcatattggggtaaaattgatgagtattgtaatgatcattgcttattcgatcctccgcgtgatgtaattgcatgccgaaaccgtttta 51522975  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
     |||||||||||||||| |||||||||||||||    
T  51522974 tttatatgagcaaaatactaaataaatggattg 51522942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 33167008 - 33166889
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| || |||  || ||| || |||| |||||||||||||||| ||||||| ||||    
T  33167008 catattggggtaaaattgctgagtattgtaatgagtattgctcattcgatcctctgcgtgatgtaattgcttgccgaaaccgttttagttatatgtgcaa 33166909  T
Q  124 aataataaataaatggattg 143  Q
    | |||||||||| |||||||    
T  33166908 agtaataaataattggattg 33166889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 35101228 - 35101097
Alignment:
Q  12 agagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaa 111  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35101228 agagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgttttaa 35101129  T
Q  112 ttatatgagcaaaataataaataaatggattg 143  Q
    ||||||||||||||||||||||||||||||||    
T  35101128 ttatatgagcaaaataataaataaatggattg 35101097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 5213617 - 5213485
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5213617 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 5213518  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||| ||||||||||||||||||||||||||    
T  5213517 attatacgagcaaaataataaataaatggattg 5213485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 13816871 - 13816739
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  13816871 cagagaggagaaacatatttgggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgtttta 13816772  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  13816771 attatatgagcaaaataataaataaatggattg 13816739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 35100044 - 35099932
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35100044 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 35099945  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  35099944 gtgttacccactt 35099932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 26749200 - 26749331
Alignment:
Q  12 agagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaa 111  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  26749200 agagaggagaaacatattggtgtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgttttaa 26749299  T
Q  112 ttatatgagcaaaataataaataaatggattg 143  Q
    ||||||||||||| ||||||||||||||||||    
T  26749300 ttatatgagcaaagtaataaataaatggattg 26749331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 15054246 - 15054134
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  15054246 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtgtatctagtacaccgcaaccatactcgaccgag 15054147  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  15054146 gtgttacccactt 15054134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 1634279 - 1634391
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||    
T  1634279 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtgaatccagtacaccgcaaccatactcgaccgag 1634378  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  1634379 gtgttacccactt 1634391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 38206452 - 38206564
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||    
T  38206452 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtgaatccagtacaccgcaaccatactcgaccgag 38206551  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  38206552 gtgttacccactt 38206564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 1957679 - 1957791
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||    
T  1957679 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatccgagggaagtggatctagtacagcacaaccatactcgaccgag 1957778  T
Q  239 gtgttacccactt 251  Q
    |||||||||||||    
T  1957779 gtgttacccactt 1957791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 17742316 - 17742209
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||  ||||||||||||||||||    
T  17742316 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaacctgggggaagtggatctagtacaccacaaccatactcgaccgag 17742217  T
Q  239 gtgttacc 246  Q
    ||||||||    
T  17742216 gtgttacc 17742209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 30532006 - 30532113
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  30532006 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaacctgggggaagtggatctagtacaccgcaaccatactcgaccgag 30532105  T
Q  239 gtgttacc 246  Q
    || |||||    
T  30532106 gtattacc 30532113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 15056368 - 15056253
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  15056368 catattggggtaaaattgttgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 15056269  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  15056268 attaataaataaatgg 15056253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 5212891 - 5212785
Alignment:
Q  140 attgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgagg 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||| ||||||  ||||||||||||||||||||    
T  5212891 attgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaacctgcaggaagtggatcaagtacatcgcaaccatactcgaccgagg 5212792  T
Q  240 tgttacc 246  Q
    |||||||    
T  5212791 tgttacc 5212785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 13815548 - 13815442
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||  |||| ||||||||||||||    
T  13815548 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaacctgggggaagtggatcaagtacatcgcaatcatactcgaccgag 13815449  T
Q  239 gtgttac 245  Q
    |||||||    
T  13815448 gtgttac 13815442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 7511534 - 7511646
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||| |||    
T  7511534 gattgttgaggatgaatgagatacatatgttcaacgttggaccgattttgagcaatctgaggaaagtggatctattataccgcaaccatactcgactgag 7511633  T
Q  239 gtgttacccactt 251  Q
    ||||||| |||||    
T  7511634 gtgttacacactt 7511646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 1955601 - 1955716
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  1955601 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 1955700  T
Q  124 aataataaataaatgg 139  Q
    | ||||||||||||||    
T  1955701 attaataaataaatgg 1955716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 38205538 - 38205657
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| || |||| || ||| || |||| |||||||||||||||||||||||||||||    
T  38205538 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgatcctccgcgtgatgtaattgcttgccgaaaccgttttaattatatgagcaa 38205637  T
Q  124 aataataaataaatggattg 143  Q
    | ||||||||||||||||||    
T  38205638 agtaataaataaatggattg 38205657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 30529944 - 30530063
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| || |||| || ||| || |||| |||||||||||||||||||||||||||||    
T  30529944 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgatcctccgcgtgatgtaattgcttgccgaaaccgttttaattatatgagcaa 30530043  T
Q  124 aataataaataaatggattg 143  Q
    | |||||||| |||||||||    
T  30530044 agtaataaatgaatggattg 30530063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 17744395 - 17744276
Alignment:
Q  20 gaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatga 119  Q
    |||||||||| ||||||||||| ||||||||||||||||||| |||||||  ||||||| |  ||||||||||| ||||  ||| |||||||||||||||    
T  17744395 gaaacatattagggtaaaattgctgagtattgtaatgagtatggctcatttgattctccactggatctagttgcatgccagaactgttttaattatatga 17744296  T
Q  120 gcaaaataataaataaatgg 139  Q
    ||||| ||||||||||||||    
T  17744295 gcaaagtaataaataaatgg 17744276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 13784114 - 13784197
Alignment:
Q  163 atatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgaggtgttacc 246  Q
    ||||||||||||||||||| |||||||||||  || |||||||||||||||||||| |||||||||||||||||||||||||||    
T  13784114 atatgctcaacgttggaccaattttgagcaacttgggggaagtggatctagtacaccgcaaccatactcgaccgaggtgttacc 13784197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 5735849 - 5735767
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgc 93  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||| ||||||    
T  5735849 cagaggggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcatttgattctccccgcgatcaagttgc 5735767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 27392309 - 27392271
Alignment:
Q  15 gaggagaaacatattggggtaaaattgttgagtattgta 53  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  27392309 gaggtgaaacatattggggtaaaattgctgagtattgta 27392271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1240 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 17 - 149
Alignment:
Q  11 cagagaggagaaacatattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgtttta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||    
T  17 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctctccgcgatctagttgcatgccgaaaccgtttta 116  T
Q  111 attatatgagcaaaataataaataaatggattg 143  Q
    |||||||||||||| ||||||||||||||||||    
T  117 attatatgagcaaagtaataaataaatggattg 149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1240; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 2229 - 2330
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  2229 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaacctgggggaagtggatctagtacaccgcaaccatactcgaccgag 2328  T
Q  239 gt 240  Q
    ||    
T  2329 gt 2330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 30006 - 30112
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |||    
T  30006 gattattgaggatgaacgagatacatatgctcaacgttggaccgatttagagcaatct-agggaagtggatctagtacaccgcaaccatactcgactgag 30104  T
Q  239 gtgttacc 246  Q
    ||||||||    
T  30105 gtgttacc 30112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 110521 - 110640
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| || |||| || ||| || |||| |||||||||||||||||||||||||||||    
T  110521 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgatcctccgcgtgatgtaattgcttgccgaaaccgttttaattatatgagcaa 110620  T
Q  124 aataataaataaatggattg 143  Q
    | ||||||||||||||||||    
T  110621 agtaataaataaatggattg 110640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 105597 - 105478
Alignment:
Q  24 catattggggtaaaattgttgagtattgtaatgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaa 123  Q
    |||||||||||||||||| ||||||||| |||||| ||||||||||| || |||| || ||| || |||| |||||||||||||||||||||||||||||    
T  105597 catattggggtaaaattgctgagtattgcaatgagcattgctcattcgatcctccgcgtgatataattgcttgccgaaaccgttttaattatatgagcaa 105498  T
Q  124 aataataaataaatggattg 143  Q
    | ||||||||||||||||||    
T  105497 agtaataaataaatggattg 105478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 169987 - 170092
Alignment:
Q  139 gattgttgaggatgaacgagatacatatgctcaacgttggaccgattttgagcaatctgagggaagtggatctagtacacagcaaccatactcgaccgag 238  Q
    ||||||||| ||||||||||||||||||||||||| ||||| |||||||||| ||| ||||| |||||||| | |||||| |||||||||||||||||||    
T  169987 gattgttgatgatgaacgagatacatatgctcaacattggagcgattttgagaaatatgaggaaagtggatatggtacaccgcaaccatactcgaccgag 170086  T
Q  239 gtgtta 244  Q
    ||||||    
T  170087 gtgtta 170092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 166670 - 166758
Alignment:
Q  55 tgagtattgctcattcaattctccccgcgatctagttgcctgccgaaaccgttttaattatatgagcaaaataataaataaatggattg 143  Q
    ||||||||| |||||  || |||| ||||||  |||||| ||||||||||||| ||||||||||| |  ||||||   |||||||||||    
T  166670 tgagtattgttcatttgatcctccgcgcgatggagttgcatgccgaaaccgttataattatatgaactgaataatgggtaaatggattg 166758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 4860 - 4909
Alignment:
Q  202 aagtggatctagtacacagcaaccatactcgaccgaggtgttacccactt 251  Q
    ||||||||||||||||| |||| |||||||||| ||||||||| ||||||    
T  4860 aagtggatctagtacaccgcaagcatactcgactgaggtgttatccactt 4909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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