View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_45 (Length: 251)
Name: NF2441_low_45
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_45 |
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| [»] scaffold0302 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 1236346 - 1236563
Alignment:
| Q |
24 |
gacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactcccctacacactaaa |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1236346 |
gacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactccccgacacactaaa |
1236445 |
T |
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| Q |
124 |
aacacacccaacagcaacacaaagctcgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1236446 |
aacacacccaacagcaacacaaagctcgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattc |
1236545 |
T |
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| Q |
224 |
aattgtcatccatctgtg |
241 |
Q |
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|||||||||||||||||| |
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| T |
1236546 |
aattgtcatccatctgtg |
1236563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 1183373 - 1183239
Alignment:
| Q |
22 |
aagacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactcccctacacacta |
121 |
Q |
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|||||||| |||||||| || | ||||||||||| |||| ||||||||| |||||||||||||||||||| |||||||||||||| |||| |||||| |
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| T |
1183373 |
aagacaatcacacatgacagatgcaaaaatatcaaccccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaact-ccctcgacacta |
1183275 |
T |
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| Q |
122 |
aaaacacacccaacagcaacacaaagctcgcaaaaa |
157 |
Q |
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| T |
1183274 |
aaaacacattcaacagcaacatgaagcgcgcaaaaa |
1183239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 1194190 - 1194126
Alignment:
| Q |
47 |
aaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactccc |
111 |
Q |
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| T |
1194190 |
aaaatatcaacaccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaaatccc |
1194126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 1183244 - 1183182
Alignment:
| Q |
172 |
caaaaacagaactttgcagacctgcattatctacatcaaaacctagatattcaattgtcatcc |
234 |
Q |
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| T |
1183244 |
caaaaacagaacttagcagacctacattatctatatcaaaacctagatattctattgccatcc |
1183182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 1194111 - 1194054
Alignment:
| Q |
150 |
cgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacat |
207 |
Q |
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|||||||| | ||||||||||||||||| |||||| ||||| ||||||||||||||| |
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| T |
1194111 |
cgcaaaaatactgcaacagctacaaaaatagaactcggcagaactgcattatctacat |
1194054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 20565 - 20346
Alignment:
| Q |
18 |
cctaaagacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactcccctacac |
117 |
Q |
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|||||| |||||||||||||| || ||||||||||||| |||| |||| | | ||||||||||| |||||||| |||||||||||| ||||| ||| |
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| T |
20565 |
cctaaatacaataacacatgacagatcacaaaatatcaactccaactatgttactgccagcaaactgtataggaccaccagaaggaaaaatccccagcac |
20466 |
T |
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| Q |
118 |
actaaaaacacacccaacagcaacacaaagctcgcaaaaagagtgcaacagctaca----aaaacagaactttgcagacctgcattatctacatcaaaac |
213 |
Q |
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||||||||||||||||||| |||||| |||| | |||||| || ||||||| |||| ||||||||||| |||||||||||||||| |||| |||| |
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| T |
20465 |
actaaaaacacacccaacaacaacacgaagcacacaaaaatagcgcaacaggtacaaaataaaacagaactcggcagacctgcattatccacattgaaac |
20366 |
T |
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| Q |
214 |
ctagatattcaattgtcatc |
233 |
Q |
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|||||||||| |||| |||| |
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| T |
20365 |
ctagatattctattgccatc |
20346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 20256439 - 20256510
Alignment:
| Q |
18 |
cctaaagacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcatag |
89 |
Q |
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||||||||||||||||||||| || |||||||||||||| |||| |||| |||| ||| |||||||||||| |
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| T |
20256439 |
cctaaagacaataacacatgacagatgacaaaatatcaactccaactatgttgcagccaacaaactgcatag |
20256510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 12857476 - 12857370
Alignment:
| Q |
18 |
cctaaagacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactcccctacac |
117 |
Q |
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|||||| | |||||||||||| | |||||||||||||| |||| |||||||| ||||||| ||||||||||| | |||||||||| ||||| ||| |
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| T |
12857476 |
cctaaatataataacacatgacatatgacaaaatatcaactccaactatgctgctgtcagcaaattgcataggaccactagaaggaaaaatccccagcac |
12857377 |
T |
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| Q |
118 |
actaaaa |
124 |
Q |
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||||||| |
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| T |
12857376 |
actaaaa |
12857370 |
T |
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