View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_47 (Length: 251)
Name: NF2441_low_47
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 43732165 - 43731939
Alignment:
| Q |
13 |
tccttagcctaaaatcaaaattacaaccagcaaactttaattgaaattcacaaacgcataatcaatacgttctttaaccgaaaatgcatacaatcaaatt |
112 |
Q |
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| T |
43732165 |
tccttagcctaaaatcaa--ttacaaccagcaaactttaattgaaattcacaaacgcataatcaatacgttctttaaccgaaaatgcatacaatcaaatt |
43732068 |
T |
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| Q |
113 |
ttatttgtattaccttggaaatagtagtttcaatgcgttcatgcctcaccaactgcgaaaccatggttctaaataaaaataaatc-aattttgagtaccc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43732067 |
ttatttgtattaccttggaaatagtagtttcaatgcgttcatgcctcaccaactgcgaaaccatggttctaaataaaaataaatcaaattttgagtaccc |
43731968 |
T |
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| Q |
212 |
acagttaacctgagcatttggaagaagaa |
240 |
Q |
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| T |
43731967 |
acagttaacctgagcatttggaagaagaa |
43731939 |
T |
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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 43821888 - 43821723
Alignment:
| Q |
13 |
tccttagcctaaaatcaaaattacaaccagcaaactttaattgaaattcacaaacgcataatcaatacgttctttaaccgaaaatgcatacaat------ |
106 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| ||| || |
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| T |
43821888 |
tccttagcctaaaatcaaaattacaacaagcaaactttaattgaaattcacaaactcataa---------------accgaaaatgcttacgattacgat |
43821804 |
T |
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| Q |
107 |
caaattttatttgtattaccttggaaatagtagtttcaatgcgttcatgcctcaccaactgcgaaaccatggttctaaata |
187 |
Q |
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| T |
43821803 |
caaattttatttagattaccttggtaatagtagtttcaatgcgttcgtgcctcaccaattgcgagaccatggttctaaata |
43821723 |
T |
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