View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_48 (Length: 246)
Name: NF2441_low_48
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 73 - 226
Target Start/End: Original strand, 4536510 - 4536663
Alignment:
| Q |
73 |
tgcggaatgaagatctatatttaggttttggtttgttatcaaccttgctattgcggaatgaagatctatatttcggtggtgattttcttccgaaaaagta |
172 |
Q |
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| T |
4536510 |
tgcggaatgaagatctatatttaggttttggtttcttatcaaccttgctattgcggaatgaagatctatatttcggtggtgattttcttccgaaaaagta |
4536609 |
T |
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| Q |
173 |
aacaggaggaggtggtggtcatcgtggcggtttgaaaaagtaaacagtaggtgg |
226 |
Q |
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| T |
4536610 |
aacaggaggaggtggtggtcgtcgtggtggttcgaaaaagtaaacaataggtgg |
4536663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 4536460 - 4536531
Alignment:
| Q |
74 |
gcggaatgaagatctatatttaggttttggtttgttatcaaccttgctattgcggaatgaagatctatattt |
145 |
Q |
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| T |
4536460 |
gcggaatgaagatctatatttagatggtggtttcttatcaattgggcgattgcggaatgaagatctatattt |
4536531 |
T |
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Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 37704454 - 37704515
Alignment:
| Q |
6 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgtt |
67 |
Q |
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| T |
37704454 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgtt |
37704515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 37698636 - 37698698
Alignment:
| Q |
6 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttg |
68 |
Q |
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| T |
37698636 |
accaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgttg |
37698698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 37698974 - 37699035
Alignment:
| Q |
7 |
ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgt |
66 |
Q |
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| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgt |
37699035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 37437520 - 37437578
Alignment:
| Q |
6 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttatttt |
64 |
Q |
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| T |
37437520 |
accaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgtttt |
37437578 |
T |
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