View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_5 (Length: 511)
Name: NF2441_low_5
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 77 - 501
Target Start/End: Complemental strand, 37216784 - 37216360
Alignment:
| Q |
77 |
atctccacacaaatggtaagcatccatgttcataagcatgcgacttccacagagatggtgaagttgcaaatatgttctgtaggaccaggcctttctctct |
176 |
Q |
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| T |
37216784 |
atctccacacaaatggtaagcatccatgttcataagcatgcgacttccacagagatggtgaagttgcaaatatgttctgtaggaccaggcctttctctct |
37216685 |
T |
|
| Q |
177 |
agacaccattcaaatatatgttttaaatagaactgggaccccatgtaccatatcatgcattcaatacaggtagaccacaaaataggttgtattgtagcaa |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37216684 |
agacaccattcaaatatatgttttaaatagaactgggaccccatgtaccatatcatgcattcaatacaggtagaccacaaaataggttgtattttagcaa |
37216585 |
T |
|
| Q |
277 |
gtttttcatcagaagatagatggataatacatgctccatcaatcccacatctacctttttgtttgctcttcttaatatacttaatgctatggataatatt |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37216584 |
gtttttcatcagaagatagatggataatacatgctccatcaatcccacatctacctttttgtttgctcttcttaatatacttaatgctatgggtaatatt |
37216485 |
T |
|
| Q |
377 |
ttactaaaacttgctagtattattctcnnnnnnnatgagacttcttttataaacaaatgtttaagttgaaattaattctagtttaactaataatcttgta |
476 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37216484 |
ttactaaaacttgctagtattattctctttttttatgagacttcttttataaacaaatgtttaagttgaaattaattctagtttaactaataatcttgta |
37216385 |
T |
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| Q |
477 |
gtaaagtattggaaatgtgcctttg |
501 |
Q |
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| T |
37216384 |
gtaaagtattggaaatgtgcctttg |
37216360 |
T |
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