View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_55 (Length: 220)
Name: NF2441_low_55
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 37704527 - 37704683
Alignment:
| Q |
1 |
tttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaag |
100 |
Q |
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| T |
37704527 |
tttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaag |
37704626 |
T |
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| Q |
101 |
accagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgat |
157 |
Q |
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| T |
37704627 |
accagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgat |
37704683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 37699048 - 37699205
Alignment:
| Q |
1 |
tttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaag |
100 |
Q |
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| T |
37699048 |
tttcataaccgtatactgatatgacatttggcaacaatattaattcagtaacaatcatagaaaagtttggtgttcattaaactaaataacatcttggaaa |
37699147 |
T |
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| Q |
101 |
acc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgat |
157 |
Q |
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| T |
37699148 |
accaagacttttcgaacgtaattagcactaaagttggaatcttattgcaagttgtgat |
37699205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 37437592 - 37437745
Alignment:
| Q |
1 |
tttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaag |
100 |
Q |
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| T |
37437592 |
tttcataaccgtatagtgatatgacaattggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacatattggaag |
37437691 |
T |
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| Q |
101 |
acc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgat |
157 |
Q |
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| T |
37437692 |
accaagacttttcgaacgtaattagc----aagttggaatcttattgcaagttgtgat |
37437745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 37698732 - 37698845
Alignment:
| Q |
49 |
taaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacg----taattagcacgaaagttggaatctta |
143 |
Q |
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|||| |||||| ||||||||||||||| ||||||||||||| ||||| ||||||| ||||||||| |||| |||||||||| ||||||||||||||| |
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| T |
37698732 |
taacaatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaattagcactaaagttggaatctta |
37698831 |
T |
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| Q |
144 |
tttcaagttgtgat |
157 |
Q |
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| T |
37698832 |
ttgcaagttgtgat |
37698845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 16841109 - 16841008
Alignment:
| Q |
56 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt |
154 |
Q |
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|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt |
16841011 |
T |
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| Q |
155 |
gat |
157 |
Q |
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||| |
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|
| T |
16841010 |
gat |
16841008 |
T |
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