View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_56 (Length: 219)
Name: NF2441_low_56
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 40147168 - 40147254
Alignment:
| Q |
1 |
gaagtttattatatggtcgcgataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtt |
87 |
Q |
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| T |
40147168 |
gaagtttattatatggtcgcgataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtt |
40147254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 8102771 - 8102696
Alignment:
| Q |
7 |
tattatatggtcgcgataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttg |
82 |
Q |
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| T |
8102771 |
tattttatggtcgggataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttg |
8102696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 7628922 - 7628861
Alignment:
| Q |
16 |
gtcgcgataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgc |
77 |
Q |
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| T |
7628922 |
gtcgcgataggagttagaccaaggcttattccaccattaccagaagattattttggaaatgc |
7628861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 7606537 - 7606479
Alignment:
| Q |
16 |
gtcgcgataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaa |
74 |
Q |
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| T |
7606537 |
gtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttggaaa |
7606479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 7655961 - 7656013
Alignment:
| Q |
22 |
ataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaa |
74 |
Q |
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| T |
7655961 |
ataggagttagaccaagacttgttccaccattgccggaagattattttggaaa |
7656013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 7637368 - 7637307
Alignment:
| Q |
16 |
gtcgcgataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgc |
77 |
Q |
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| T |
7637368 |
gtcgtgataggagttcgaccaaggttagttccaccgttaccagaagattattttggaaatgc |
7637307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 7615546 - 7615490
Alignment:
| Q |
21 |
gataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgc |
77 |
Q |
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| T |
7615546 |
gataggagttcgaccaaggttagttccaccattaccagaatattattttggaaatgc |
7615490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 8938714 - 8938753
Alignment:
| Q |
35 |
caaggtttgttccaccattgcctgaagattattttggaaa |
74 |
Q |
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| T |
8938714 |
caaggtttgttccaccattaccagaagattattttggaaa |
8938753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 8910985 - 8911041
Alignment:
| Q |
21 |
gataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgc |
77 |
Q |
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| T |
8910985 |
gataggagttggaccaaggttagttccaccattaccagaatattattttggaaatgc |
8911041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 8935924 - 8935980
Alignment:
| Q |
21 |
gataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgc |
77 |
Q |
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| T |
8935924 |
gataggagttggaccaaggttagttccaccattaccagaatattattttggaaatgc |
8935980 |
T |
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