View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2441_low_62 (Length: 212)
Name: NF2441_low_62
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2441_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 4864372 - 4864497
Alignment:
| Q |
1 |
aagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattattggccggaatgaaagttatgtttagcttctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4864372 |
aagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattattggccggaatgaaagttatgtttagcttctc |
4864471 |
T |
|
| Q |
101 |
atttgatttgatttgaatgcaatatt |
126 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
4864472 |
atttgatttgatttgaatgcaatatt |
4864497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 4711717 - 4711595
Alignment:
| Q |
1 |
aagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattattggccggaatgaaagttatgtttagcttctc |
100 |
Q |
| |
|
|||||||||||||||| | ||| ||||| |||||||| ||||||||||||||||| |||||||| || || ||||||||||||||| |||||||||| |
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| T |
4711717 |
aagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtt---tggaatgaaagttatgcttagcttctc |
4711621 |
T |
|
| Q |
101 |
atttgatttgatttgaatgcaatatt |
126 |
Q |
| |
|
||||| |||||||||||||||||||| |
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| T |
4711620 |
atttggtttgatttgaatgcaatatt |
4711595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 4696835 - 4696713
Alignment:
| Q |
1 |
aagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattattggccggaatgaaagttatgtttagcttctc |
100 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| || ||||| || || ||||||||||||||||||| |||||| |
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| T |
4696835 |
aagaaggcattgacacaacttctattccgttaatgaaagcataataaggatttgactggtttatgttgctg---ggaatgaaagttatgtttaacttctc |
4696739 |
T |
|
| Q |
101 |
atttgatttgatttgaatgcaatatt |
126 |
Q |
| |
|
||||| |||| ||||||||||||||| |
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|
| T |
4696738 |
atttggtttggtttgaatgcaatatt |
4696713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 4653946 - 4654068
Alignment:
| Q |
1 |
aagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattattggccggaatgaaagttatgtttagcttctc |
100 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| || ||| | || ||| ||||||||||||||||||||||||| |
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| T |
4653946 |
aagaaggcatagacacaacttcaattccattaatgaaagcataataaggatttgaatggtttgtgttgttg---ggaatgaaagttatgtttagcttctt |
4654042 |
T |
|
| Q |
101 |
atttgatttgatttgaatgcaatatt |
126 |
Q |
| |
|
||| | || || ||| |||||||||| |
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|
| T |
4654043 |
attcggttggacttggatgcaatatt |
4654068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 4637307 - 4637429
Alignment:
| Q |
1 |
aagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattattggccggaatgaaagttatgtttagcttctc |
100 |
Q |
| |
|
|||||||||| ||||| ||||| || || ||||| || |||||| ||||||||||||| ||||| | || | |||||||||||||||||| ||| || |
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| T |
4637307 |
aagaaggcattgacacaacttcgatcccgttaataaaagcataacaaggatttgattggtttatgctgttag---gaatgaaagttatgtttaacttttc |
4637403 |
T |
|
| Q |
101 |
atttgatttgatttgaatgcaatatt |
126 |
Q |
| |
|
||||| ||||||||| |||||||||| |
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|
| T |
4637404 |
atttggtttgatttgtatgcaatatt |
4637429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 4783480 - 4783358
Alignment:
| Q |
1 |
aagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattattggccggaatgaaagttatgtttagcttctc |
100 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||| |||||| |||| | |||| ||| | || |||| ||||||||||||||||||||||||| |
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| T |
4783480 |
aagaaggcatagacacaacttcgattccgttaatgaaagcataactaggaatcaattggtttgtgttgttgg---gaatgaaagttatgtttagcttctc |
4783384 |
T |
|
| Q |
101 |
atttgatttgatttgaatgcaatatt |
126 |
Q |
| |
|
|||| ||||||||| ||| |||||| |
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|
| T |
4783383 |
gtttggtttgatttggatggaatatt |
4783358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 4815909 - 4815787
Alignment:
| Q |
1 |
aagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattattggccggaatgaaagttatgtttagcttctc |
100 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||| |||||| |||| | |||| ||| | || |||| ||||||||||||||||||||||||| |
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| T |
4815909 |
aagaaggcatagacacaacttcgattccgttaatgaaagcataactaggactcaattggtttgtgttgttgg---gaatgaaagttatgtttagcttctc |
4815813 |
T |
|
| Q |
101 |
atttgatttgatttgaatgcaatatt |
126 |
Q |
| |
|
|||| ||||||||| ||| |||||| |
|
|
| T |
4815812 |
gtttggtttgatttggatggaatatt |
4815787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 4845657 - 4845535
Alignment:
| Q |
1 |
aagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattattggccggaatgaaagttatgtttagcttctc |
100 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| |||| ||| |||||| ||||||| ||| ||||| || || ||||| ||||||||||||||||||| | |
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|
| T |
4845657 |
aagaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgtt---cggaaagaaagttatgtttagcttccc |
4845561 |
T |
|
| Q |
101 |
atttgatttgatttgaatgcaatatt |
126 |
Q |
| |
|
||||| |||||| ||||||||||||| |
|
|
| T |
4845560 |
atttggtttgatctgaatgcaatatt |
4845535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 4644216 - 4644265
Alignment:
| Q |
75 |
ggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaata |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||| |||||||| |
|
|
| T |
4644216 |
ggaatgaaagttatgtttagcttctcatttgttttaatttggatgcaata |
4644265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 4631451 - 4631481
Alignment:
| Q |
75 |
ggaatgaaagttatgtttagcttctcatttg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4631451 |
ggaatgaaagttatgtttagcttctcatttg |
4631481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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