View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2441_low_9 (Length: 441)

Name: NF2441_low_9
Description: NF2441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2441_low_9
NF2441_low_9
[»] chr5 (4 HSPs)
chr5 (33-363)||(32795331-32795655)
chr5 (187-363)||(19670674-19670849)
chr5 (290-363)||(32796346-32796419)
chr5 (271-361)||(26896586-26896676)
[»] chr7 (7 HSPs)
chr7 (252-363)||(7961781-7961892)
chr7 (252-363)||(11269961-11270072)
chr7 (187-297)||(11269753-11269862)
chr7 (310-363)||(1103162-1103215)
chr7 (252-307)||(36208004-36208059)
chr7 (197-297)||(11280342-11280442)
chr7 (277-367)||(1716668-1716758)
[»] chr1 (6 HSPs)
chr1 (252-363)||(22840973-22841084)
chr1 (252-363)||(22827041-22827152)
chr1 (252-352)||(22826646-22826746)
chr1 (195-307)||(20260903-20261014)
chr1 (271-359)||(24272755-24272843)
chr1 (187-237)||(26207059-26207109)
[»] scaffold0065 (1 HSPs)
scaffold0065 (187-363)||(34699-34873)
[»] chr6 (13 HSPs)
chr6 (252-353)||(13556018-13556119)
chr6 (271-363)||(2921875-2921967)
chr6 (272-363)||(13558009-13558100)
chr6 (252-363)||(27340619-27340728)
chr6 (252-363)||(27401359-27401468)
chr6 (271-362)||(16403529-16403619)
chr6 (252-363)||(2923172-2923284)
chr6 (194-363)||(11678844-11679008)
chr6 (198-359)||(11677130-11677290)
chr6 (268-355)||(22879999-22880086)
chr6 (271-368)||(16910129-16910226)
chr6 (268-355)||(22898114-22898201)
chr6 (271-355)||(14721721-14721804)
[»] chr4 (9 HSPs)
chr4 (252-363)||(27272575-27272687)
chr4 (258-363)||(53469673-53469778)
chr4 (271-358)||(10395972-10396059)
chr4 (252-363)||(53472556-53472665)
chr4 (197-367)||(50887366-50887527)
chr4 (271-364)||(32015166-32015259)
chr4 (271-360)||(29235155-29235244)
chr4 (275-367)||(13816943-13817035)
chr4 (277-361)||(21206356-21206441)
[»] scaffold0007 (1 HSPs)
scaffold0007 (286-359)||(260213-260286)
[»] chr2 (4 HSPs)
chr2 (284-361)||(10128507-10128584)
chr2 (252-363)||(8761186-8761298)
chr2 (274-363)||(37965516-37965606)
chr2 (271-355)||(25550091-25550174)
[»] chr3 (4 HSPs)
chr3 (194-363)||(25889628-25889789)
chr3 (252-352)||(30046435-30046534)
chr3 (252-364)||(37133785-37133897)
chr3 (288-361)||(31141410-31141483)
[»] chr8 (2 HSPs)
chr8 (271-330)||(42001905-42001964)
chr8 (271-363)||(33897214-33897306)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 33 - 363
Target Start/End: Original strand, 32795331 - 32795655
Alignment:
Q  33 tcaagaacaatattaagaacaaaaataaccttaatcaaatttcccttttttaaatatatctcataaaaatatctgttgaagaatgaaaagggaataatct 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32795331 tcaagaacaatattaagaacaaaaataaccttaatcaaatttcccttttttaaatatatctcataaaaatatctgttgaagaatgaagagggaataatct 32795430  T
Q  133 gtcaaactatttgtgttgaaacatctgaactaaatgctagagttgagcataaactat-aaaaaacagaaagaaaggaattgtataatttaattaataatt 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32795431 gtcaaactatttgtgttgaaacatctgaactaaatgctagagttgagcataaactataaaaaaacagaaagaaaggaattgtataatttaattaataatt 32795530  T
Q  232 acatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttata 331  Q
    ||||| ||||||      | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| |||||||| |||    
T  32795531 acata-ttacat------gatagtagaggtaacgttagttatagcaaaacccactaactattggtacaagtaatactgacacgcaagacttttattaata 32795623  T
Q  332 tgactaagtctttgcatatttcttcatattat 363  Q
    ||||||||||||||||||||||||||||||||    
T  32795624 tgactaagtctttgcatatttcttcatattat 32795655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 187 - 363
Target Start/End: Complemental strand, 19670849 - 19670674
Alignment:
Q  187 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccact 286  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||| ||  || |||| |   |||||||||||||| ||| ||||||||||||||||    
T  19670849 tataagaaacagaaagaaaggaattgtataatgtaattaataattacagatc-acgtatactgaatagtagaggtaacgctagctatagcaaaacccact 19670751  T
Q  287 aactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 363  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19670750 aactattggtacaagtaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattat 19670674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 290 - 363
Target Start/End: Original strand, 32796346 - 32796419
Alignment:
Q  290 tattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 363  Q
    |||| ||||||| |||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32796346 tatttgtgcaaggaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattat 32796419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 271 - 361
Target Start/End: Complemental strand, 26896676 - 26896586
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 361  Q
    ||||||||||| || ||||||||  |||||| |||||  |||||||| |  |||||||||||| | |||||||||||||||||||| ||||    
T  26896676 tatagcaaaacacattaactattaatgcaagaaatactaacacacaatgtctttatttatatggccaagtctttgcatatttcttcctatt 26896586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 252 - 363
Target Start/End: Complemental strand, 7961892 - 7961781
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatt 351  Q
    ||||||| |||| | ||| ||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||| ||  |||||||||||    
T  7961892 tagtagaagtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaaacctttgcatatt 7961793  T
Q  352 tcttcatattat 363  Q
    ||||||||||||    
T  7961792 tcttcatattat 7961781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 252 - 363
Target Start/End: Complemental strand, 11270072 - 11269961
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatt 351  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||| ||   |||  |||||    
T  11270072 tagtagaggtaacactagttatagcaaaacccactaactattggtgcaactaatactaacacacaaggcttttatttatatgaccaaacttttttatatt 11269973  T
Q  352 tcttcatattat 363  Q
    ||||||||||||    
T  11269972 tcttcatattat 11269961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 187 - 297
Target Start/End: Original strand, 11269753 - 11269862
Alignment:
Q  187 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccact 286  Q
    ||||||||| ||||||||| |||||||||||| ||||| ||||||||| | ||||| ||| ||  |||||||||||||| ||| |||||||||||  |||    
T  11269753 tataaaaaatagaaagaaatgaattgtataatgtaattgataattacaga-ttacagatactaactagtagaggtaacgctagctatagcaaaacttact 11269851  T
Q  287 aactattggtg 297  Q
    |||||||||||    
T  11269852 aactattggtg 11269862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 1103215 - 1103162
Alignment:
Q  310 acacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 363  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||||||    
T  1103215 acacacaaggcttttatttatatggccaagtctttacatatttcttcatattat 1103162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 36208059 - 36208004
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaatac 307  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  36208059 tagtagagctaacgctagctatagcaaaacccactaactattggtgcaagaaatac 36208004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 11280442 - 11280342
Alignment:
Q  197 agaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggt 296  Q
    |||||||||| ||||||||||| ||||| ||||||||| |||     ||| |   |||||||||||||| ||| |||||||||||| |||||||||||||    
T  11280442 agaaagaaagaaattgtataatgtaattgataattacagattacgggatactgtctagtagaggtaacgctagctatagcaaaacctactaactattggt 11280343  T
Q  297 g 297  Q
    |    
T  11280342 g 11280342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 367
Target Start/End: Original strand, 1716668 - 1716758
Alignment:
Q  277 aaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattattcga 367  Q
    ||||| |||||||||||| |||||| ||||   ||||||||| | ||||||||||||   |||||||| ||||||| |||||||| |||||    
T  1716668 aaaactcactaactattgatgcaagaaatattaacacacaagacctttatttatatggtcaagtctttacatattttttcatattcttcga 1716758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 252 - 363
Target Start/End: Complemental strand, 22841084 - 22840973
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatt 351  Q
    ||||||| |||| | ||| ||||| ||||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||| ||| |||||||||||    
T  22841084 tagtagaagtaatgctagctatagtaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttttatgaccaagcctttgcatatt 22840985  T
Q  352 tcttcatattat 363  Q
    ||||||||||||    
T  22840984 tcttcatattat 22840973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 252 - 363
Target Start/End: Original strand, 22827041 - 22827152
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatt 351  Q
    ||||||| |||| | ||| |||| |||||||||||||||||||||||||| ||||   |||||||||||||||||||||||||| ||  |||||||||||    
T  22827041 tagtagaagtaatgctagctataacaaaacccactaactattggtgcaagaaatatgaacacacaaggcttttatttatatgaccaaacctttgcatatt 22827140  T
Q  352 tcttcatattat 363  Q
    ||||||||||||    
T  22827141 tcttcatattat 22827152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 352
Target Start/End: Original strand, 22826646 - 22826746
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatt 351  Q
    ||||||| |||| | ||| |||||||||| |||||||||||||||||||| |||||  ||||| |||||||||||||||||||| ||| ||||||| |||    
T  22826646 tagtagaagtaatgctagctatagcaaaatccactaactattggtgcaagaaatactaacacataaggcttttatttatatgaccaagcctttgcagatt 22826745  T
Q  352 t 352  Q
    |    
T  22826746 t 22826746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 20260903 - 20261014
Alignment:
Q  195 acagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattg 294  Q
    ||||||||||| | |||||||||| ||||||||||||||| | ||||||||| |   |||||||||||||| ||||||||||||||  || || ||||||    
T  20260903 acagaaagaaatggattgtataatgtaattaataattacaga-ttacatatactgaatagtagaggtaacgctagttatagcaaaattcattagctattg 20261001  T
Q  295 gtgcaagtaatac 307  Q
     |||||| |||||    
T  20261002 atgcaagaaatac 20261014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 359
Target Start/End: Complemental strand, 24272843 - 24272755
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcata 359  Q
    ||||| ||||| ||||||||||||||||||| |||||  ||||||||||| ||||| |||||    |||||||||||||||||||||||    
T  24272843 tatagtaaaactcactaactattggtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcata 24272755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 26207059 - 26207109
Alignment:
Q  187 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatat 237  Q
    |||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  26207059 tataaagaatagaaagaaaggaattgtataatgtaattaataattacatat 26207109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 187 - 363
Target Start/End: Complemental strand, 34873 - 34699
Alignment:
Q  187 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccact 286  Q
    ||||| ||||||||||||| ||||||||||||  |||| |||||||||  |||||| ||| ||  ||||||| ||||  |||| ||||||||||||||||    
T  34873 tataagaaacagaaagaaatgaattgtataatgaaattgataattacaagtttacaaatactaaatagtagaagtaatattagctatagcaaaacccact 34774  T
Q  287 aactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 363  Q
    |||||||||||| | ||||||    ||||||| ||||||||||||||||||||  ||| ||||||| || |||||||    
T  34773 aactattggtgctaataatac--taacacaagacttttatttatatgactaagcattttcatatttttttatattat 34699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 252 - 353
Target Start/End: Original strand, 13556018 - 13556119
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatt 351  Q
    ||||||| |||| | ||| |||||||||||||| |||||||||||||||| |||||  |||||||||||||||||||||||||| ||| |||||||||||    
T  13556018 tagtagaagtaatgctagctatagcaaaacccagtaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaagcctttgcatatt 13556117  T
Q  352 tc 353  Q
    ||    
T  13556118 tc 13556119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 271 - 363
Target Start/End: Original strand, 2921875 - 2921967
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 363  Q
    ||||||||||||||||||||||||||||||| |||||  ||||| ||| ||||||||||||| || ||||| |||||||||||||||||||||    
T  2921875 tatagcaaaacccactaactattggtgcaagaaatactaacacataagacttttatttatattaccaagtcattgcatatttcttcatattat 2921967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 272 - 363
Target Start/End: Original strand, 13558009 - 13558100
Alignment:
Q  272 atagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 363  Q
    ||||||||| |||||||||||||||||| | |||||  |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  13558009 atagcaaaatccactaactattggtgcatgaaatactaacacacaatgcttttatttatatgaccaagcctttgcatatttcttcatattat 13558100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 252 - 363
Target Start/End: Original strand, 27340619 - 27340728
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatt 351  Q
    ||||||| |||| | |||||||||||||||||||||||||||||| ||||  ||||  |||||||  | ||||||||||||||| ||| |||||||||||    
T  27340619 tagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacaca--gtttttatttatatgaccaagcctttgcatatt 27340716  T
Q  352 tcttcatattat 363  Q
    ||||||||||||    
T  27340717 tcttcatattat 27340728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 252 - 363
Target Start/End: Original strand, 27401359 - 27401468
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatt 351  Q
    ||||||| |||| | |||||||||||||||||||||||||||||| ||||  ||||  |||||||  | ||||||||||||||| ||| |||||||||||    
T  27401359 tagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacaca--gtttttatttatatgaccaagcctttgcatatt 27401456  T
Q  352 tcttcatattat 363  Q
    ||||||||||||    
T  27401457 tcttcatattat 27401468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 271 - 362
Target Start/End: Complemental strand, 16403619 - 16403529
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatta 362  Q
    |||||||||| ||||||| ||||||||||| |||||   ||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  16403619 tatagcaaaatccactaattattggtgcaaataatataaacacacaagacttttatttatatgactaagtc-ttgcatatttcttcatatta 16403529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 252 - 363
Target Start/End: Original strand, 2923172 - 2923284
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtc-tttgcatat 350  Q
    ||||||| ||||  |||| |||| ||| |||||||||||||| ||||||| | |||  ||||||||| |||||||||||||||| ||| | |||||||||    
T  2923172 tagtagaagtaatattagctataacaagacccactaactattagtgcaagaagtactaacacacaagacttttatttatatgaccaagccttttgcatat 2923271  T
Q  351 ttcttcatattat 363  Q
    |||||||||||||    
T  2923272 ttcttcatattat 2923284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 194 - 363
Target Start/End: Complemental strand, 11679008 - 11678844
Alignment:
Q  194 aacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactatt 293  Q
    ||||||||||||||||||| ||||| ||||| |||| |||||||| ||| ||| |   |||||||||||| | ||  |||||||||| ||||||    ||    
T  11679008 aacagaaagaaaggaattgaataatgtaattgataaatacatatt-acaaatactgaatagtagaggtaatgctaactatagcaaaatccacta----tt 11678914  T
Q  294 ggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 363  Q
    ||||  || |||||  |||||||||  ||||||||| ||||| ||| |||||||||||||||||||||||    
T  11678913 ggtgttagaaatactaacacacaagagttttatttacatgaccaagcctttgcatatttcttcatattat 11678844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 359
Target Start/End: Complemental strand, 11677290 - 11677130
Alignment:
Q  198 gaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggtg 297  Q
    ||||||||||||||| ||||| | |||||||| ||||   ||||| |||  |  |||||||||||| | ||| ||||| ||||||| |||||||||||||    
T  11677290 gaaagaaaggaattgaataatgtcattaataaatacaagattacaaatacgaa-tagtagaggtaatgctagctataggaaaacccgctaactattggtg 11677192  T
Q  298 caagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcata 359  Q
      || |||||  |||||||||  ||||||||||||||  ||  |||||||||||||||||||    
T  11677191 ttagaaatactaacacacaagagttttatttatatgatcaatcctttgcatatttcttcata 11677130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 22879999 - 22880086
Alignment:
Q  268 agttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttctt 355  Q
    ||||||||||||||||||||| |||||||||||| ||||   ||||||||  | |||||||||||||| |||| |||  |||||||||    
T  22879999 agttatagcaaaacccactaattattggtgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctt 22880086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 368
Target Start/End: Original strand, 16910129 - 16910226
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattattcgac 368  Q
    ||||||||||| ||| ||||||||| ||||  |||||  ||||||||  ||||||||||||   | ||||||||||||||| ||||||||||| ||||    
T  16910129 tatagcaaaacacacaaactattggcgcaacaaatactaacacacaatacttttatttataatgccaagtctttgcatattccttcatattatccgac 16910226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 22898114 - 22898201
Alignment:
Q  268 agttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttctt 355  Q
    ||||||||||||||||||||| |||||||||||| ||||   ||||| ||  | |||||||||||||| |||| |||  |||||||||    
T  22898114 agttatagcaaaacccactaattattggtgcaagaaatattaacacaaaaaacctttatttatatgaccaagtatttatatatttctt 22898201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 355
Target Start/End: Complemental strand, 14721804 - 14721721
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttctt 355  Q
    |||| ||||||||| ||||||||| |||||| |||||  | | |||||||||||||||||| | | || ||||||||||||||||    
T  14721804 tataacaaaacccattaactattgctgcaagaaatacttataaacaaggcttttatttata-ggccaaatctttgcatatttctt 14721721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 252 - 363
Target Start/End: Complemental strand, 27272687 - 27272575
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaa-cccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatat 350  Q
    ||||||| |||| | ||| |||||||||| ||||||||||||||||||||| |||||  ||||||||| |||||||||||||||| ||  ||||||||||    
T  27272687 tagtagaagtaatgctagctatagcaaaaacccactaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaaacctttgcatat 27272588  T
Q  351 ttcttcatattat 363  Q
    |||||||||||||    
T  27272587 ttcttcatattat 27272575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 53469673 - 53469778
Alignment:
Q  258 aggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttca 357  Q
    ||||||| || | ||||| |||| ||||||||||||| | |||| |||||  ||||||||| |||||||||||||||| |||||||||||||||||||||    
T  53469673 aggtaacattggctatagtaaaatccactaactattgattcaagaaatactaacacacaagacttttatttatatgaccaagtctttgcatatttcttca 53469772  T
Q  358 tattat 363  Q
    ||||||    
T  53469773 tattat 53469778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 271 - 358
Target Start/End: Complemental strand, 10396059 - 10395972
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcat 358  Q
    ||||||| |||||||||||||||| |||||| |||||  |||||||||||||||||||||||| |  |||||||||||||||||||||    
T  10396059 tatagcataacccactaactattgatgcaagaaatactaacacacaaggcttttatttatatggccgagtctttgcatatttcttcat 10395972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 252 - 363
Target Start/End: Original strand, 53472556 - 53472665
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatt 351  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||||||| | |||||  ||||||||  |||||||||||||| | |||||||||||||||    
T  53472556 tagtagaggtaacgctagctatagcaaaacccactaaccattggtgcatgaaatactaacacacaa-acttttatttatatggc-aagtctttgcatatt 53472653  T
Q  352 tcttcatattat 363  Q
    ||||| ||||||    
T  53472654 tcttcgtattat 53472665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 197 - 367
Target Start/End: Original strand, 50887366 - 50887527
Alignment:
Q  197 agaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggt 296  Q
    |||||||||||||||||||||| ||||| ||||||||||||        | ||  ||||||||||||   ||| ||||||||||||||||||||||| ||    
T  50887366 agaaagaaaggaattgtataatgtaattgataattacatat--------actaaatagtagaggtaatactagctatagcaaaacccactaactattagt 50887457  T
Q  297 gcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattattcga 367  Q
    | ||| || ||| || |||||| | |||||||||||| | ||| |||||||||||| ||||||||||||||    
T  50887458 gtaagcaaaaccaacgcacaagacatttatttatatggccaagcctttgcatattt-ttcatattattcga 50887527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 364
Target Start/End: Complemental strand, 32015259 - 32015166
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattatt 364  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||  | ||||||||| |  | |||||||||||||| ||||| |||||||    
T  32015259 tatagcaaaacccactaactattggtgcaagaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatcttcctattatt 32015166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 360
Target Start/End: Original strand, 29235155 - 29235244
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaat-accgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatat 360  Q
    |||||||||||| || ||||||||||||||| ||| ||  ||||||||||| |||||||||||| | |||||||||||||||| |||||||    
T  29235155 tatagcaaaacc-acgaactattggtgcaagaaattactaacacacaaggcctttatttatatggccaagtctttgcatattttttcatat 29235244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 367
Target Start/End: Complemental strand, 13817035 - 13816943
Alignment:
Q  275 gcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattattcga 367  Q
    ||||||| ||||||||||| || |||| ||||   ||||| ||||  |||||||||||||| ||||||| ||||||||||||||||| |||||    
T  13817035 gcaaaactcactaactatttgtacaagaaataataacacataaggtctttatttatatgaccaagtcttcgcatatttcttcatattcttcga 13816943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 361
Target Start/End: Complemental strand, 21206441 - 21206356
Alignment:
Q  277 aaaacccactaactattggtgcaagtaa-taccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 361  Q
    ||||||||||||||||||||| ||  || |||  | ||||| |||||||||||||||||| ||| ||||| |||||||||| ||||    
T  21206441 aaaacccactaactattggtgtaataaaatactaatacacatggcttttatttatatgaccaagcctttgtatatttcttcgtatt 21206356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 286 - 359
Target Start/End: Original strand, 260213 - 260286
Alignment:
Q  286 taactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcata 359  Q
    |||||||||||||||| |||||  |||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  260213 taactattggtgcaagaaatactaacacacaaggattttatttatttgactaagtctttgcatatttcttcata 260286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 284 - 361
Target Start/End: Complemental strand, 10128584 - 10128507
Alignment:
Q  284 actaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 361  Q
    |||||||||||||||||| |||||  ||||||||| |||||||||||||||| |||||||| ||||||||||||||||    
T  10128584 actaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatatt 10128507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 363
Target Start/End: Original strand, 8761186 - 8761298
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatga-ctaagtctttgcatat 350  Q
    |||||||| ||| | ||| |||| ||||| |||||||| ||||||||||| |||||  ||||||||| ||||||||||||||| | |||| |||||||||    
T  8761186 tagtagagataatgctagctataacaaaatccactaacaattggtgcaagaaatactaacacacaagacttttatttatatgaccaaagtatttgcatat 8761285  T
Q  351 ttcttcatattat 363  Q
    |||||||||||||    
T  8761286 ttcttcatattat 8761298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 37965516 - 37965606
Alignment:
Q  274 agcaaaacccactaactattggtgcaagtaataccgacacacaagg-cttttatttatatgactaagtctttgcatatttcttcatattat 363  Q
    ||||||||||| |||||||||||||||| |||||  |||||||| | |||||||||||||  | |||||||||||||||||||||||||||    
T  37965516 agcaaaacccattaactattggtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttcttcatattat 37965606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 355
Target Start/End: Complemental strand, 25550174 - 25550091
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttctt 355  Q
    ||||| |||| |||||||||||| || |||| |||||  ||||||||| |||||||||||||| | || ||||| ||||||||||    
T  25550174 tataggaaaatccactaactattagtccaagaaatact-acacacaagacttttatttatatggccaaatctttacatatttctt 25550091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 194 - 363
Target Start/End: Complemental strand, 25889789 - 25889628
Alignment:
Q  194 aacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactatt 293  Q
    ||||||||||||||||||||||||| ||||| ||||        ||||| | | ||  || ||||||||  | ||| |||||||||||||||||||||||    
T  25889789 aacagaaagaaaggaattgtataatgtaattgataa--------ttacaaagactaaataatagaggtactgctagctatagcaaaacccactaactatt 25889698  T
Q  294 ggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 363  Q
    |||||||| |||||  ||| ||||| |||||||||||||||| ||  |||||||||  ||||||| ||||    
T  25889697 ggtgcaagaaatactaacatacaagacttttatttatatgaccaaacctttgcataactcttcatgttat 25889628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 252 - 352
Target Start/End: Complemental strand, 30046534 - 30046435
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatt 351  Q
    |||||||||||||| ||| |||||||||||| |||||||||| || |||| |||||  |||||||| |||||||||||||||   |||||||||||||||    
T  30046534 tagtagaggtaacgctagctatagcaaaaccgactaactatt-gtacaagaaatactaacacacaaagcttttatttatatggtcaagtctttgcatatt 30046436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 364
Target Start/End: Original strand, 37133785 - 37133897
Alignment:
Q  252 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatt 351  Q
    |||||||| |||| |||||||||||||||  |||||||||||| || ||| |||||  | ||||||| |||||||| ||| | |||| |||| | |||||    
T  37133785 tagtagagttaacattagttatagcaaaattcactaactattgatgtaagaaatactaatacacaagacttttattcatacggctaaatcttcgtatatt 37133884  T
Q  352 tcttcatattatt 364  Q
    | |||||||||||    
T  37133885 ttttcatattatt 37133897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 31141483 - 31141410
Alignment:
Q  288 actattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 361  Q
    |||||||||| ||| |||||  |||| |||| |||||||||||||| |||| ||||||||||||||||| ||||    
T  31141483 actattggtgtaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctatt 31141410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 42001964 - 42001905
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttat 330  Q
    |||||||||||| |||||||||||||||||||| |||  ||||||||| |||||||||||    
T  42001964 tatagcaaaacctactaactattggtgcaagtattactaacacacaagacttttatttat 42001905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 363
Target Start/End: Complemental strand, 33897306 - 33897214
Alignment:
Q  271 tatagcaaaacccactaactattggtgcaagtaataccgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattat 363  Q
    |||| ||||||| ||||| |||||||| ||  |||||  ||||||||| |||||||||||||    || ||||| ||||||||||| ||||||    
T  33897306 tataacaaaacctactaattattggtgtaaaaaatactaacacacaagacttttatttatattgtcaaatctttacatatttcttcctattat 33897214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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