View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_high_10 (Length: 358)
Name: NF2442_high_10
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 37710169 - 37709825
Alignment:
| Q |
1 |
ttaattattgctctatcttctcattgcttgcctacatggttttccccctgttgcaagatatggagaaatttctattaaaattaatatttccttttaattt |
100 |
Q |
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| T |
37710169 |
ttaattattgctctatcttctcattgcttgcctacatggttttccccctgttgcaagatatggagaaatttctagtaaatttaatatttccttttaattt |
37710070 |
T |
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| Q |
101 |
gtttatnnnnnnntgttatcctgtatatataaaattcaaacaaataacaattacaaaggaaggtgcaactacaataatttatcatattgctgaaattaca |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37710069 |
gtttataaaaaaatgttatcctgtatatataaaattcaaacaaataacaattacaaaggaaggtgcaactacaataatttatcatattgctgaaattgca |
37709970 |
T |
|
| Q |
201 |
aataagcagactaataatggtttaaataagaacaaggttgcttattaatttattcaataaacaattttatagatatattactctaggaattgggtgaggg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37709969 |
aataagcagactaataatggtttaaataagaacaaggttgcttactaatttattcaataaacaattttatagatatattactctaggaattgggtgaggg |
37709870 |
T |
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| Q |
301 |
tttctcctctatctccatcatgattctagattaagggtaatttat |
345 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37709869 |
tttctcctctatctccatcatgactctagattaagggtaatttat |
37709825 |
T |
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