View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_high_14 (Length: 299)
Name: NF2442_high_14
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 2622450 - 2622183
Alignment:
| Q |
15 |
atgaagaaataaaaacaaagaattaatatagacatgaacctaacattaatcaatcacaatttacaatcaaggttcactgacctcaccatctttacatata |
114 |
Q |
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| T |
2622450 |
atgaagaaataaaaacaaagaattaatatagacatgaacctaacattaatcaatcacaatttacaatcaaggttcactgacctcaccatctttacatata |
2622351 |
T |
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| Q |
115 |
cccacattaatcaccattcttcctttcttatttgatttcatcactctgcagcagtttctccttggagcctgccaaatatatttaatatataaagccacaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2622350 |
cccacattaatcaccattcttcctttcttatttgacttcatcactctgcagcagtttctccttggagcctgccaaatatatttaatatataaagccacaa |
2622251 |
T |
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| Q |
215 |
ttaggtaacatattaatttccaaaacacactcaaaacaagttggaacttatagaagctaaacattact |
282 |
Q |
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| T |
2622250 |
ttaggtaacatattaatttccaaaacacactcaaaacaagttggaacttatagaagctaaacattact |
2622183 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 41316425 - 41316513
Alignment:
| Q |
107 |
tacatatacccacattaatcaccattcttcctttcttatttgatttcatcactctgcagcagtttctccttggagcctgccaaatatat |
195 |
Q |
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| T |
41316425 |
tacacatacccacatctatcaccatggttcctttcttctttgacctcataactctgcaacagtttctccttggagcctgtaaaatatat |
41316513 |
T |
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