View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_high_3 (Length: 475)
Name: NF2442_high_3
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_high_3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 9 - 459
Target Start/End: Original strand, 40995037 - 40995487
Alignment:
| Q |
9 |
aggagcagagaaatcaaatgttaaatctttcacgccctgttgtgtcgcaaaagcaacacaaccttcaattgtttccccacaagtttgagggtttgaaatc |
108 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40995037 |
aggatcagagaaatcaaatgttaaatctttcacgccctgttgtgtcgcaaaagcaacacaaccttcaattgtttccccacaagtttgagggtttgaaatc |
40995136 |
T |
|
| Q |
109 |
gtgagagaaaacttgttgatgtcatggctagtgaactgcgcaatccaatttgtgatgaagtcgacgaaaacttttctctgcgcttgtttgattttatcgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
40995137 |
gtgagagaaaacttgttgatgtcatggctagtgaactgcgcaatccaatttgtgataaagtcgaggaaaacttttctctgcgcttgtttgattttatcgg |
40995236 |
T |
|
| Q |
209 |
aatttgaatcaacgaagaagttttcattgaaatcgatgtggtcttcggactgccatatctttaaccagttgttaaggatacttgttctccttgcggcttc |
308 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40995237 |
aacttgaatcaacgaagaagttttcattgaaatcgatgtggtcttcggactgccatatctttaaccagttgttaaggatacttgttctccttgcggcttc |
40995336 |
T |
|
| Q |
309 |
ttcggaaggtaggaaagaaacgattgcaagacgaagcgattctggtatcaaagaaaacaattccatgttatttcttgccatggttttgattatgaatata |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40995337 |
ttcggaaggtaggaaagaaacgattgcaagacgaagcgattctgatatcaaagaaaacaattccatgttatttcttgccatggttttgattatgaatata |
40995436 |
T |
|
| Q |
409 |
cgataatgatatgtagggttactgtgtttagtgataatggtgaattatttg |
459 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
40995437 |
cgataatgatatgtagggttactgtgtttagtgatagtggtgaattatttg |
40995487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 40987229 - 40987458
Alignment:
| Q |
15 |
agagaaatcaaatgttaaatctttcacgccctgttgtgtcgcaaaagcaacacaaccttcaattgtttccccacaagtttgagggtttgaaatcgtgaga |
114 |
Q |
| |
|
||||||||||| |||||||||||||| ||| |||||||| | ||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
40987229 |
agagaaatcaagagttaaatctttcacaccccgttgtgtcacgaaagcaacacaacgttcgattgtttccccacaagtttgagggtttgaaacagtgaga |
40987328 |
T |
|
| Q |
115 |
gaaaacttgttgatgtcatggctagtgaactgcgcaatccaatttgtgatgaagtcgacgaaaacttttctctgcgcttgtttgattttatcggaatttg |
214 |
Q |
| |
|
||||||||||| || | |||||||||| || |||||||||||| |||||||||||| |||||||| |||||| |||||||||||| | | ||| ||| |
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|
| T |
40987329 |
gaaaacttgttaattcgacggctagtgaattgtgcaatccaatttttgatgaagtcgatgaaaacttctctctgtccttgtttgatttcacccgaagttg |
40987428 |
T |
|
| Q |
215 |
aatcaacgaagaagttttcattgaaatcga |
244 |
Q |
| |
|
||||||| || |||||||| ||||| |||| |
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|
| T |
40987429 |
aatcaacaaaaaagttttcgttgaagtcga |
40987458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 31463162 - 31463428
Alignment:
| Q |
9 |
aggagcagagaaatcaaatgttaaatctttcacgccctgttgtgtcgcaaaagcaacacaaccttcaattgtttccccacaagtttgagggtttgaaatc |
108 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| || ||||| |||| |||||||||||| ||||||||||||||||||| ||||||||||||||| | |
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|
| T |
31463162 |
aggatcagagaaatcaagagttaaatctttcacaccgcgttgtatcgcgaaagcaacacaatgttcaattgtttccccacaaatttgagggtttgaaacc |
31463261 |
T |
|
| Q |
109 |
gtgagagaaaacttgttgatgtcatggctagtgaactgcgcaatccaatttgtgatgaagtcgacgaaaacttttctctgcgcttgtttgattttatcgg |
208 |
Q |
| |
|
|||||||||| ||||| ||| | |||||| || || |||||||||||||||||||||| || |||||||| ||| || ||||||||||||| ||| |
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|
| T |
31463262 |
atgagagaaaatttgttaatgcgacggctagacaagtgtgcaatccaatttgtgatgaagttgatgaaaacttctctttgtgcttgtttgatttcatcca |
31463361 |
T |
|
| Q |
209 |
aatttgaatcaacgaagaagttttcattgaaatcgatgtggtcttcggactgccatatctttaacca |
275 |
Q |
| |
|
|| ||||| || || | |||||| |||||||| |||| || |||| ||||||||| ||||||| |
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|
| T |
31463362 |
aaggtgaattgacaaaaaggttttcgttgaaatcaatgttttcaccggattgccatatccttaacca |
31463428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 58 - 239
Target Start/End: Complemental strand, 31462519 - 31462338
Alignment:
| Q |
58 |
aaagcaacacaaccttcaattgtttccccacaagtttgagggtttgaaatcgtgagagaaaacttgttgatgtcatggctagtgaactgcgcaatccaat |
157 |
Q |
| |
|
||||||||| ||| ||| |||||||| ||||||||||||||||| ||||||||||||||| ||||| ||| | |||||||| | || |||||||||| |
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|
| T |
31462519 |
aaagcaacaaaacattcgattgtttctccacaagtttgagggttcaaaatcgtgagagaaattttgttaatgcaacggctagtgtagtgtgcaatccaat |
31462420 |
T |
|
| Q |
158 |
ttgtgatgaagtcgacgaaaacttttctctgcgcttgtttgattttatcggaatttgaatcaacgaagaagttttcattgaa |
239 |
Q |
| |
|
|||||||||||| | | |||||| ||| || ||||||||||||| ||| ||| ||||||| || || |||||||||||||| |
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|
| T |
31462419 |
ttgtgatgaagttgttgtaaacttctctttgtgcttgtttgatttcatctgaagttgaatcgacaaaaaagttttcattgaa |
31462338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 31477205 - 31477436
Alignment:
| Q |
16 |
gagaaatcaaatgttaaatctttcacgccctgttgtgtcgcaaaagcaacacaaccttcaattgtttccccacaagtttgagggtttgaaatcgtgagag |
115 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||| |||| ||||||||| ||| ||| |||||||||| ||||||||||||||| |||| | |||| | |
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|
| T |
31477205 |
gagaaatcaagagttaaatctttcacacagcgttgtatcgcgaaagcaacataacgttcgattgtttcccaacaagtttgagggttcgaaaccatgaggg |
31477304 |
T |
|
| Q |
116 |
aaaacttgttgatgtcatggctagtgaactgcgcaatccaatttgtgatgaagtcgacgaaaacttttctctgcgcttgtttgattttatcggaatttga |
215 |
Q |
| |
|
|||| ||||| || | | ||||||||| || || ||||||||||||||||| | || |||||||| ||| || || |||||||||| ||| || |||| |
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|
| T |
31477305 |
aaaatttgttaatatgacagctagtgaagtgtgcgatccaatttgtgatgaaattgatgaaaacttctctttgtgcctgtttgatttcatccaaagttga |
31477404 |
T |
|
| Q |
216 |
atcaacgaagaagttttcattgaaatcgatgt |
247 |
Q |
| |
|
|| || || | |||||| ||||| ||||||| |
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|
| T |
31477405 |
attgacaaaaaggttttcgttgaagtcgatgt |
31477436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 275
Target Start/End: Complemental strand, 31476850 - 31476588
Alignment:
| Q |
14 |
cagagaaatcaaatgttaaatctttcacgccctgttgtgtcgcaaaagcaacacaaccttcaatt-gtttccccacaagtttgagggtttgaaatcgtga |
112 |
Q |
| |
|
||||||||||||| ||| |||||| || || |||||||| | ||||||||| ||| ||| ||| |||||||| |||||||||| ||| ||| ||||| |
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|
| T |
31476850 |
cagagaaatcaaaagtttaatcttccatacctcgttgtgtcacgaaagcaacaaaacattcgatttgtttccccgcaagtttgagtgttcaaaaccgtga |
31476751 |
T |
|
| Q |
113 |
gagaaaacttgttgatgtcatggctagtgaactgcgcaatccaatttgtgatgaagtcgacgaaaacttttctctgcgcttgtttgattttatcggaatt |
212 |
Q |
| |
|
|||||| || || |||| | ||| |||||| || |||||||||||||||||||||| | ||||| || | | || ||||||||||||| | | || | |
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|
| T |
31476750 |
gagaaatttttttaatgtgacggccagtgaagtgtgcaatccaatttgtgatgaagttgttgaaaatttatttttgtgcttgtttgatttcacctaaagt |
31476651 |
T |
|
| Q |
213 |
tgaatcaacgaagaagttttcattgaaatcgatgtggtcttcggactgccatatctttaacca |
275 |
Q |
| |
|
|||||| || || ||||||||||||| ||||||| ||| |||| || |||||| ||||||| |
|
|
| T |
31476650 |
tgaatcgacaaaacagttttcattgaagtcgatgttgtcaccggattgtcatatccttaacca |
31476588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 29 - 419
Target Start/End: Complemental strand, 21179747 - 21179357
Alignment:
| Q |
29 |
ttaaatctttcacgccctgttgtgtcgcaaaagcaacacaaccttcaattgtttccccacaagtttgagggtttgaaatcgtgagagaaaacttgttgat |
128 |
Q |
| |
|
|||| |||||||| ||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||| || |||| ||||||||||||| |||| || |
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|
| T |
21179747 |
ttaactctttcactccccgttgtatcgtgaaagcaacacaacgctcaattgtttccccacaagtttgaggattcgaaaccgtgagagaaaacctgttaat |
21179648 |
T |
|
| Q |
129 |
gtcatggctagtgaactgcgcaatccaatttgtgatgaagtcgacgaaaacttttctctgcgcttgtttgattttatcggaatttgaatcaacgaagaag |
228 |
Q |
| |
|
| | |||||| || || || |||||| | || || |||| || |||||||||||| || |||||||| ||| ||| ||| ||||||| || |||||| |
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|
| T |
21179647 |
ggcgcggctaggaaagtgtgcgatccaactcgtaataaagttgatgaaaacttttctttgttcttgtttgttttcatcagaagttgaatccacaaagaag |
21179548 |
T |
|
| Q |
229 |
ttttcattgaaatcgatgtggtcttcggactgccatatctttaaccagttgttaaggatacttgttctccttgcggcttcttcggaaggtaggaaagaaa |
328 |
Q |
| |
|
||||||||||| ||||||| ||||| || |||||||||||| |||| || | || | | | | | |||||| |||||||| ||| ||||||||||||| |
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|
| T |
21179547 |
ttttcattgaagtcgatgttttcttcagattgccatatctttgaccatttttggagaagaataggtgtccttgtggcttcttgggagggtaggaaagaaa |
21179448 |
T |
|
| Q |
329 |
cgattgcaagacgaagcgattctggtatcaaagaaaacaattccatgttatttcttgccatggttttgattatgaatatacgataatgata |
419 |
Q |
| |
|
||||||||||| |||| | || | ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
21179447 |
cgattgcaagaagaagtggttttagtatcgaagaaaacaattccatgttatctcttgccatggttttgaatatgaatatacgatgatgata |
21179357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 457
Target Start/End: Complemental strand, 21179344 - 21179308
Alignment:
| Q |
421 |
gtagggttactgtgtttagtgataatggtgaattatt |
457 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
21179344 |
gtagggttactgtttttagtgataatggtggattatt |
21179308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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