View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_high_4 (Length: 466)
Name: NF2442_high_4
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 42519045 - 42518603
Alignment:
| Q |
1 |
gctgaaaaagtgtggatgctttatgttggccgcatgttgcttggttttggaataggatgtgctaaccaggtaaaaatattatgtggttaatttttaatga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519045 |
gctgaaaaagtgtggatgctttatgttggccgcatgttgcttggttttggaataggatgtgctaaccaggtaaaaatattatgtggttaatttttaatga |
42518946 |
T |
|
| Q |
101 |
ataaacacttggattaaaaatatataaaacatggagnnnnnnntgcaaggatagcataacagtctctggttgggtaaattagtcctcaattttatgtttt |
200 |
Q |
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|||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518945 |
ataaacacttagattaaaaata----aaacatgga--aaaaaatgcaaggataccataacagtctctggttgggtaaattagtcctcaattttatgtttt |
42518852 |
T |
|
| Q |
201 |
tggtactactttactgtttaaaataaaatatgtcacgaaattaagttgtgtgcgtaaattgttaactactcttttcttttttgacaaatgttaattactc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518851 |
tggtactactttactgtttaaaataaaatatgtcacgaaattaagttgtgtgcgtaaattgttaactactcttttcttttttgacaaatgttaattactc |
42518752 |
T |
|
| Q |
301 |
atattgttatatatattttaactgatttattatttaggtagtttactaatcttgcgta-ttttttacaacagtccgtgccaatctatatgtctgaagttg |
399 |
Q |
| |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518751 |
atattgttatatatagttcaactgatttattatttaggtagtttactaatcttgcatatttttttacaacagtccgtgccaatctatatgtctgaagttg |
42518652 |
T |
|
| Q |
400 |
ctccctacaagtatagaggagctcttaacatgatgttccaattggcaat |
448 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518651 |
ctccctacaagtatagaggagctcttaacatgatgttccaattggcaat |
42518603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 202 - 448
Target Start/End: Complemental strand, 1240525 - 1240281
Alignment:
| Q |
202 |
ggtactactttactgtttaaaataaaatatgtcacgaaattaagttgtgtgcgtaaattgttaactactcttttcttttttgacaaatgttaattactca |
301 |
Q |
| |
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||||||||||||||| || ||||||||||| ||| || |||||| ||||||| ||||||||||| |||| ||| | | |||||||||||||||||| | |
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|
| T |
1240525 |
ggtactactttactgattgaaataaaatatctcatgatattaagctgtgtgcataaattgttaagtactttttg--tgtgtgacaaatgttaattactta |
1240428 |
T |
|
| Q |
302 |
tattgttatatatattttaactgatttattatttaggtagtttactaatcttgcgtattttttacaacagtccgtgccaatctatatgtctgaagttgct |
401 |
Q |
| |
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|| |||||| |||| || |||| |||||||||||| ||||||||||||| |||| | ||||||| ||||||| |||||||||||| |||| || |||||| |
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| T |
1240427 |
tactgttatttatagttcaacttatttattatttaagtagtttactaatgttgcattttttttataacagtctgtgccaatctatctgtccgaggttgct |
1240328 |
T |
|
| Q |
402 |
ccctacaagtatagaggagctcttaacatgatgttccaattggcaat |
448 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1240327 |
ccctacaagtatagaggagctcttaacatgatgttccaattgtcaat |
1240281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 1240824 - 1240709
Alignment:
| Q |
1 |
gctgaaaaagtgtggatgctttatgttggccgcatgttgcttggttttggaataggatgtgctaaccaggtaaaaatattatgtggttaatttttaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||| |
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| T |
1240824 |
gctgaaaaagtgtggatgctttatgttggccgcatgttgcttggttttggaataggatgtgctaaccaggtaaaaa-aacatgtggtcaattcttaatga |
1240726 |
T |
|
| Q |
101 |
ataaacacttggattaa |
117 |
Q |
| |
|
|||||| ||| |||||| |
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|
| T |
1240725 |
ataaactcttagattaa |
1240709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 448
Target Start/End: Original strand, 42551379 - 42551452
Alignment:
| Q |
375 |
gtgccaatctatatgtctgaagttgctccctacaagtatagaggagctcttaacatgatgttccaattggcaat |
448 |
Q |
| |
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|||||||| || |||||||||||||||| ||||| || |||||||||||||| |||||||| ||||||||||| |
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|
| T |
42551379 |
gtgccaatatacgtgtctgaagttgctccatacaattacagaggagctcttaatatgatgtttcaattggcaat |
42551452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 202 - 448
Target Start/End: Complemental strand, 41972157 - 41971911
Alignment:
| Q |
202 |
ggtactactttactgtttaaaataaaatatgtcacgaaattaagttgtgtgcgtaaattgttaactactcttttcttttttgacaaatgttaattactca |
301 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||| || |||||||||||||| ||||||||||| |||| ||| | | |||||||||||||||||| | |
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| T |
41972157 |
ggtactactttactgattgaaataaaatatctcatgatattaagttgtgtgcataaattgttaagtactttttg--tgtgtgacaaatgttaattactta |
41972060 |
T |
|
| Q |
302 |
tattgttatatatattttaactgatttattatttaggtagtttactaatcttgcgtatttttt--acaacagtccgtgccaatctatatgtctgaagttg |
399 |
Q |
| |
|
|| |||||| ||| || |||| |||||||||||| ||||||||||||| |||| | |||||| | ||||||| |||||||||||| ||||||| |||| |
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|
| T |
41972059 |
tactgttattaatagttcaacttatttattatttaagtagtttactaatgttgcattttttttttataacagtctgtgccaatctatctgtctgaggttg |
41971960 |
T |
|
| Q |
400 |
ctccctacaagtatagaggagctcttaacatgatgttccaattggcaat |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41971959 |
ctccctacaagtatagaggagctcttaacatgatgttccaattgtcaat |
41971911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 41972457 - 41972342
Alignment:
| Q |
1 |
gctgaaaaagtgtggatgctttatgttggccgcatgttgcttggttttggaataggatgtgctaaccaggtaaaaatattatgtggttaatttttaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||| |
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| T |
41972457 |
gctgaaaaagtgtggatgctttatgttggccgcatgttgcttggttttggaataggatgtgctaaccaggtaaaaa-aacatgtggttaattcttaatga |
41972359 |
T |
|
| Q |
101 |
ataaacacttggattaa |
117 |
Q |
| |
|
|||||| ||| |||||| |
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|
| T |
41972358 |
ataaactcttagattaa |
41972342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 18234830 - 18234757
Alignment:
| Q |
375 |
gtgccaatctatatgtctgaagttgctccctacaagtatagaggagctcttaacatgatgttccaattggcaat |
448 |
Q |
| |
|
|||||||| ||| | ||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18234830 |
gtgccaatttatgtttctgaggtggctccgtataagtatagaggagctcttaacatgatgttccaattggcaat |
18234757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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