View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2442_high_5 (Length: 440)

Name: NF2442_high_5
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2442_high_5
NF2442_high_5
[»] chr8 (2 HSPs)
chr8 (10-421)||(37494396-37494817)
chr8 (343-421)||(31254018-31254096)
[»] chr4 (3 HSPs)
chr4 (343-422)||(5448310-5448389)
chr4 (343-419)||(18830663-18830739)
chr4 (343-421)||(5324770-5324848)
[»] chr7 (4 HSPs)
chr7 (346-417)||(43257355-43257426)
chr7 (343-419)||(14197548-14197624)
chr7 (343-421)||(27508690-27508768)
chr7 (343-421)||(38761079-38761157)
[»] chr1 (1 HSPs)
chr1 (343-418)||(37608086-37608161)
[»] chr6 (3 HSPs)
chr6 (343-406)||(19295415-19295478)
chr6 (343-417)||(25089266-25089340)
chr6 (346-406)||(25089237-25089297)
[»] chr2 (2 HSPs)
chr2 (343-417)||(31499441-31499515)
chr2 (346-421)||(32092846-32092921)
[»] scaffold0102 (1 HSPs)
scaffold0102 (343-419)||(24006-24082)
[»] chr5 (1 HSPs)
chr5 (343-421)||(13753316-13753394)
[»] chr3 (3 HSPs)
chr3 (343-421)||(11989132-11989210)
chr3 (343-421)||(15005072-15005150)
chr3 (353-417)||(26920279-26920343)


Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 421
Target Start/End: Complemental strand, 37494817 - 37494396
Alignment:
Q  10 taattctagaaggagaattggggtagtggagtttgcatttgattgaatgcaaaaatttatttttcctttgcggtatccaaatattgtgcctgtgatggtg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  37494817 taattctagaaggagaattggggtagtggagtttgcatttgattgaatgcaaaaacttatttttcctttgcggtatccaaatattgtgcctgtaatggtg 37494718  T
Q  110 gtggatggtgtgagtgaagaagaggagtatttggatattgtatcttggtcttcaactatggttgtacaattgcaggttgggattagtagttgcatgagag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37494717 gtggatggtgtgagtgaagaagaggagtatttggatattgtatcttggtcttcaactacggttgtacaattgcaggttgggattagtagttgcatgagag 37494618  T
Q  210 aacgtagcaatctccatgatcttacttgtttgtggcagtccactgttgtaacgccggtggccatgttgctcgttg---tacttgataactagctttggag 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||   ||||||||||||||||||||||    
T  37494617 aacgtagcaatctccatgatcttacttgtttgtggcagtccactgttgtaacgccggtagccatgttgctagttgctatacttgataactagctttggag 37494518  T
Q  307 ttgcacgtttagttgttatatagtctctgaat-------agattgcagactctgttagtcaatttggtccttcaatacagacttcattagtcacttcact 399  Q
    |||||||| |||||||||||||||||||||||       | ||||| || ||||||||||||||| |||| | ||| |||||||||||||||| ||||||    
T  37494517 ttgcacgtctagttgttatatagtctctgaatgcaatgcacattgctgattctgttagtcaatttagtccctgaatgcagacttcattagtcaattcact 37494418  T
Q  400 ccctgaaattgaccaacagagt 421  Q
    |||| |||||||||||||||||    
T  37494417 ccctaaaattgaccaacagagt 37494396  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 421
Target Start/End: Original strand, 31254018 - 31254096
Alignment:
Q  343 tgcagactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaacagagt 421  Q
    |||||||||||||||||||||| |||| | |||  ||| ||  |||||||||| | ||||||||||| |||||| ||||    
T  31254018 tgcagactctgttagtcaatttagtccctaaatgtagattttgttagtcactttaatccctgaaattaaccaacggagt 31254096  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 5448310 - 5448389
Alignment:
Q  343 tgcagactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaacagagtt 422  Q
    ||||||||| ||| |||||||| |||| | |||| |||||||||||||||||| | | ||||||||||||||||||||||    
T  5448310 tgcagactccgttggtcaatttagtccctgaatatagacttcattagtcactttagttcctgaaattgaccaacagagtt 5448389  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 419
Target Start/End: Complemental strand, 18830739 - 18830663
Alignment:
Q  343 tgcagactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaacaga 419  Q
    ||||||||  |||||||||||| |||| | |||  ||||| |||||||||||| | |||||||||||||||||||||    
T  18830739 tgcagacttcgttagtcaatttagtccctgaatgtagactccattagtcactttagtccctgaaattgaccaacaga 18830663  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 421
Target Start/End: Complemental strand, 5324848 - 5324770
Alignment:
Q  343 tgcagactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaacagagt 421  Q
    |||||||||||||||||||||| |||||| |||  | |||   || ||||||| | |||||||||||||||||||||||    
T  5324848 tgcagactctgttagtcaatttagtccttgaatgtaaactctgttcgtcactttagtccctgaaattgaccaacagagt 5324770  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 417
Target Start/End: Complemental strand, 43257426 - 43257355
Alignment:
Q  346 agactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaaca 417  Q
    ||||||||||||||||||| |||| | |||  ||||||| ||||||| || |||||||||||||||||||||    
T  43257426 agactctgttagtcaatttagtccctaaatgtagacttcgttagtcaatttactccctgaaattgaccaaca 43257355  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 419
Target Start/End: Complemental strand, 14197624 - 14197548
Alignment:
Q  343 tgcagactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaacaga 419  Q
    ||||||||| |||||||||||| |||  |||||  ||||| | |||||||||| | |||||||||||||||||||||    
T  14197624 tgcagactccgttagtcaatttagtctctcaatgtagactccgttagtcactttagtccctgaaattgaccaacaga 14197548  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 421
Target Start/End: Original strand, 27508690 - 27508768
Alignment:
Q  343 tgcagactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaacagagt 421  Q
    |||||||||||||||||||||| |||| | |||  ||||| | |||||||||| | ||| |||||||||| ||||||||    
T  27508690 tgcagactctgttagtcaatttagtccctgaatgtagactccgttagtcactttagtccatgaaattgactaacagagt 27508768  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 421
Target Start/End: Complemental strand, 38761157 - 38761079
Alignment:
Q  343 tgcagactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaacagagt 421  Q
    |||||||||||||||||||||| |||| | ||| ||||||   |||||||||| | ||||  ||||||| |||||||||    
T  38761157 tgcagactctgttagtcaatttagtccctgaatgcagactctgttagtcactttagtcccaaaaattgatcaacagagt 38761079  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 418
Target Start/End: Original strand, 37608086 - 37608161
Alignment:
Q  343 tgcagactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaacag 418  Q
    |||||||||||||||||||||| |||||| |||  ||||| | ||||||||||   ||||||||||||||||||||    
T  37608086 tgcagactctgttagtcaatttagtccttgaatgtagactccgttagtcactttggtccctgaaattgaccaacag 37608161  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 406
Target Start/End: Complemental strand, 19295478 - 19295415
Alignment:
Q  343 tgcagactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaa 406  Q
    |||||||||||||||||||||| |||| | ||| |||||||||||||||| || | ||||||||    
T  19295478 tgcagactctgttagtcaatttagtccctgaatgcagacttcattagtcaatttagtccctgaa 19295415  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 417
Target Start/End: Original strand, 25089266 - 25089340
Alignment:
Q  343 tgcagactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaaca 417  Q
    |||||||||  ||||||||||| |||| | |||  |||||||||||||||||| | ||| |||||||||||||||    
T  25089266 tgcagactccattagtcaatttagtccctgaatgtagacttcattagtcactttagtccatgaaattgaccaaca 25089340  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 406
Target Start/End: Original strand, 25089237 - 25089297
Alignment:
Q  346 agactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaa 406  Q
    ||||||||||||||||||| ||| || ||| |||||| ||||||||| || | ||||||||    
T  25089237 agactctgttagtcaatttagtcattgaatgcagactccattagtcaatttagtccctgaa 25089297  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 417
Target Start/End: Complemental strand, 31499515 - 31499441
Alignment:
Q  343 tgcagactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaaca 417  Q
    ||||||||| |||||||||||| |||||| |||  |||||| ||| |||||||   |||||||||||||||||||    
T  31499515 tgcagactccgttagtcaatttagtccttgaatgtagactttatttgtcactttggtccctgaaattgaccaaca 31499441  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 421
Target Start/End: Complemental strand, 32092921 - 32092846
Alignment:
Q  346 agactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaacagagt 421  Q
    ||||||||||||||||||| |||| | |||  ||||||| |||||||||| | | ||||| |||||| ||||||||    
T  32092921 agactctgttagtcaatttagtccctgaatgtagacttcgttagtcactttagttcctgagattgacaaacagagt 32092846  T

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Target: scaffold0102 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 419
Target Start/End: Original strand, 24006 - 24082
Alignment:
Q  343 tgcagactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaacaga 419  Q
    ||||||||||||| |||||||| |||||| |||  |||||| ||| |||||||   ||| |||||||||||||||||    
T  24006 tgcagactctgttggtcaatttagtccttgaatgtagactttattcgtcacttttgtccatgaaattgaccaacaga 24082  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 421
Target Start/End: Complemental strand, 13753394 - 13753316
Alignment:
Q  343 tgcagactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaacagagt 421  Q
    ||||||||| |||||||||||| | || | ||   ||||| ||| |||||||| | |||||||||||||||||||||||    
T  13753394 tgcagactccgttagtcaatttagcccctgaaagtagactccatcagtcactttagtccctgaaattgaccaacagagt 13753316  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 421
Target Start/End: Complemental strand, 11989210 - 11989132
Alignment:
Q  343 tgcagactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaacagagt 421  Q
    ||||||||| |||| ||||||| |||||| |||  ||||| | |||| ||||| | || ||||||||||||||||||||    
T  11989210 tgcagactccgttaatcaatttagtccttaaatgtagactccgttagccactttagtctctgaaattgaccaacagagt 11989132  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 421
Target Start/End: Original strand, 15005072 - 15005150
Alignment:
Q  343 tgcagactctgttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaacagagt 421  Q
    ||||||||| |||||| ||||| |||||| |||  | ||||  |||||||||| | ||||||||||||||| |||||||    
T  15005072 tgcagactcagttagttaatttagtccttgaatgtatactttgttagtcacttaaatccctgaaattgaccgacagagt 15005150  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 26920279 - 26920343
Alignment:
Q  353 gttagtcaatttggtccttcaatacagacttcattagtcacttcactccctgaaattgaccaaca 417  Q
    |||||||||||| |||||| |||  || || |||||||||||| | ||||||||||||| |||||    
T  26920279 gttagtcaatttagtccttaaatgtaggctccattagtcactttaatccctgaaattgatcaaca 26920343  T

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