View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_high_6 (Length: 400)
Name: NF2442_high_6
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 10 - 400
Target Start/End: Original strand, 35497067 - 35497457
Alignment:
| Q |
10 |
ctgagatgaacaaaagaaatcagaatttatttaattggtgcaaaattgtgggaaacaagttatgtaatcagtatgttaacataaacctcatccttctata |
109 |
Q |
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| T |
35497067 |
ctgaaatgaacaaaagaaatcagaatttatttaattggtgcaaaattgtgggaaacaagttatgtaatcagtatgttaacataaacctcatccttctata |
35497166 |
T |
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| Q |
110 |
accaaccccagagaacattccagtgaatttaacaagttattaggtcatccccaggagcaaaaatttccaccaatttatcataagagaatagaaataatat |
209 |
Q |
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| T |
35497167 |
accaaccccagagaacattccagtgaatttaacaagttattaggtcatccctaggagcaaaaatttccgccaatttatcataagagaatagaaataatat |
35497266 |
T |
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| Q |
210 |
atcacagaatgacatatatgttatttgcctttcatgatagcaaccataaaacgaacagaagctaactggattaatttcaatgtcaaagcagccttaggca |
309 |
Q |
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| T |
35497267 |
atcacagaatgacatatatgttatttgcctttcatgatagcaaccataaaacgaacagaagctaactggattaatttcaatgtcaaagcagccttaggca |
35497366 |
T |
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| Q |
310 |
ctgtcagattcatttcctgaatcaatattcatcggttgtggttgagcattgtagacaatcttctcatcctcataacgttttttatcaacac |
400 |
Q |
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| T |
35497367 |
ctgtcagattcatttcctgaatcaatattcatcggttgtggttgagcattgtagacaatcttctcatcctcataacgttttttatcaacac |
35497457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 349
Target Start/End: Complemental strand, 50095295 - 50095205
Alignment:
| Q |
260 |
acgaacagaagctaactggattaatttcaatgtcaaag-cagccttaggcactgtcagattcatttcctgaatcaatattcatcggttgtg |
349 |
Q |
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| T |
50095295 |
acgaacataagctaactggattaatctcaatgttaaaggcagccttaggcactgccatattcatttcctggatcaatattcattggttgtg |
50095205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 50095430 - 50095370
Alignment:
| Q |
126 |
attccagtgaatttaacaagttattaggtcatccccaggagcaaaaatttccaccaattta |
186 |
Q |
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| T |
50095430 |
attccagtgaatttcacaagtcattaggtcatcccaaagagcataaatatgcatcaattta |
50095370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 7074197 - 7074127
Alignment:
| Q |
277 |
ggattaatttcaatgtcaaagcagccttaggcactgtcagattcatttcctgaatcaatattcatcggttg |
347 |
Q |
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| T |
7074197 |
ggattaatatcaatattaaggcaaccttaggcactgtcagattcatttcctgaatcaatattcataggttg |
7074127 |
T |
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