View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2442_high_7 (Length: 397)

Name: NF2442_high_7
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2442_high_7
NF2442_high_7
[»] chr2 (3 HSPs)
chr2 (1-159)||(44748769-44748915)
chr2 (122-219)||(832430-832530)
chr2 (188-228)||(15540053-15540093)
[»] chr4 (1 HSPs)
chr4 (122-182)||(39073939-39074001)
[»] chr7 (2 HSPs)
chr7 (316-361)||(27136098-27136143)
chr7 (138-192)||(20277049-20277103)
[»] chr8 (2 HSPs)
chr8 (122-182)||(6403958-6404020)
chr8 (138-192)||(29345785-29345839)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 44748915 - 44748769
Alignment:
Q  1 cgtcagccacttggagaaaaaagatcaaccagtttgttcctttccttcttggttgcaagattaagaggtgtgcagaggggaattttatatagtacatgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||         
T  44748915 cgtcagccacttggagaaaaaagatcaaccagtttgttcctttccttcttggttgcaagattaagaggtgtgcagaggagaattttatatgctac----- 44748821  T
Q  101 acattgaattgaatgaaaatttgtaattgaaattgtggcatggttcatttccactatga 159  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44748820 -------attgaatgaaaatttgtaattgaaattgtggcatggttcatttccactatga 44748769  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 832530 - 832430
Alignment:
Q  122 tgtaattgaaattgtg---gcatggttcatttccactatgaaatccaatttcaaatttttgtattagagcatatcaggtgtcttgaatctaattaaagtt 218  Q
    ||||||||||||||||   | || ||| ||||||| |||||||||||||||||||| ||||||| |||  ||||  || ||||||| ||||| |||||||    
T  832530 tgtaattgaaattgtgtttgtatagtttatttccattatgaaatccaatttcaaatgtttgtatgagaatatatttggagtcttgagtctaaataaagtt 832431  T
Q  219 t 219  Q
    |    
T  832430 t 832430  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 15540053 - 15540093
Alignment:
Q  188 catatcaggtgtcttgaatctaattaaagtttgatcttcaa 228  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  15540053 catatcaagagtcttgaatctaattaaagtttgatcttcaa 15540093  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 39073939 - 39074001
Alignment:
Q  122 tgtaattgaaattgtg--gcatggttcatttccactatgaaatccaatttcaaatttttgtat 182  Q
    ||||||||||||||||  |||| ||||||||||| ||||||||| |||||||||| |||||||    
T  39073939 tgtaattgaaattgtgttgcatagttcatttccaatatgaaatcaaatttcaaatatttgtat 39074001  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 27136143 - 27136098
Alignment:
Q  316 gcaaaaattataagtaggcgacaattttttattgttactaatgatg 361  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  27136143 gcaaaaattataagtaggcaacattttattattgttactaatgatg 27136098  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 20277049 - 20277103
Alignment:
Q  138 gcatggttcatttccactatgaaatccaatttcaaatttttgtattagagcatat 192  Q
    |||| ||||||||||| ||||||||| |||||||||| ||||||| ||| |||||    
T  20277049 gcatagttcatttccattatgaaatcaaatttcaaatgtttgtatgagaacatat 20277103  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 6404020 - 6403958
Alignment:
Q  122 tgtaattgaaattgtg--gcatggttcatttccactatgaaatccaatttcaaatttttgtat 182  Q
    ||||||||||||||||  ||||  |||||||||| ||||||||| |||||||||| |||||||    
T  6404020 tgtaattgaaattgtgttgcatacttcatttccattatgaaatcaaatttcaaatgtttgtat 6403958  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 29345839 - 29345785
Alignment:
Q  138 gcatggttcatttccactatgaaatccaatttcaaatttttgtattagagcatat 192  Q
    |||| ||||||||||| ||||||||| |||||||||| ||||||| ||| |||||    
T  29345839 gcatagttcatttccattatgaaatcaaatttcaaatgtttgtatgagaacatat 29345785  T

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