View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_high_9 (Length: 385)
Name: NF2442_high_9
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 367
Target Start/End: Original strand, 35497508 - 35497859
Alignment:
| Q |
16 |
agaaatgacaacttagtaacacatgataggattttatcagtgatcgggaatgacattatgcgaaaatggaactgcatataaaatgaaacaactgtcaaac |
115 |
Q |
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| T |
35497508 |
agaaatgacaacttagtaacacatgataggattttatcagtgatcgagaatgacattatgcgaaaatggaactgcatataaaatgaaacaactgtcaaac |
35497607 |
T |
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| Q |
116 |
agccatacctgacannnnnnnccagttttctccaagtaattttgccacatccgtaaatgaaatcccaggattagctttctttatattctgtcattnnnnn |
215 |
Q |
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| T |
35497608 |
agccatacctgacatttttttccagttttctccaagtaactttgccacatccgtaaatgaaatcccaggattagctttctttatattctgtcgttaaaaa |
35497707 |
T |
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| Q |
216 |
nnnnnnnntcgtttgaaatttctccatcgatggttgtagacaatcttgcagaagggaaatgatcatttccacacacccaaatccaaaacgacgccattgg |
315 |
Q |
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| T |
35497708 |
aagaaaaaccgtttgaaatttctccatcgatggttgtagacaatcttgcagaagggaaatgatcatttccacacacccaaatccaaaacgacaccattgg |
35497807 |
T |
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| Q |
316 |
catatatataacataaaacacacctctctttccatttgagaaaagaacatga |
367 |
Q |
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| T |
35497808 |
catatatataacataaaacacacctctctttccatttgagaaaagaacatga |
35497859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 7073925 - 7073830
Alignment:
| Q |
115 |
cagccatacctgacannnnnnnccagttttctccaagtaattttgccacatccgtaaatgaaatcccaggattagctttctttatattctgtcatt |
210 |
Q |
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| T |
7073925 |
cagccatacctgacagatttttccatttttctccaagtactcttcccacgtccgtaaatgaaattccaggattagttttctttagattctgtcatt |
7073830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 7073763 - 7073723
Alignment:
| Q |
327 |
cataaaacacacctctctttccatttgagaaaagaacatga |
367 |
Q |
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| T |
7073763 |
cataaaacaaacctctctttccatctgagaaaagaacatga |
7073723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 50094825 - 50094775
Alignment:
| Q |
160 |
ccacatccgtaaatgaaatcccaggattagctttctttatattctgtcatt |
210 |
Q |
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| T |
50094825 |
ccacatccgtaaatgaaatcccaatattagttttctttagattctgtcatt |
50094775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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