View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_low_1 (Length: 746)
Name: NF2442_low_1
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 163 - 730
Target Start/End: Complemental strand, 4516929 - 4516362
Alignment:
| Q |
163 |
ccatctccattgcattaacattggaagaaaaatatgattgtgttgttcctaacatcatttgagaagaatttccagttgataaagacaacattggtggtaa |
262 |
Q |
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| T |
4516929 |
ccatctccattgcattaacatttgaagaaaaatatgattgtgttgttcctaacatcatttgagaagaatttccagttgataaagacaacattggtggcaa |
4516830 |
T |
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| Q |
263 |
agatgtaataaagccattgtttcccaattgagaagaattttcagcattagtggaagtacctccccattggtaattcgtaccaagtggcatattgtttaat |
362 |
Q |
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| T |
4516829 |
agatgtaataaagccattgtttcccaattgagaagaattttcagcatcattggaagtacctccccattggtaattcgtaccaagtggcatattgtttaat |
4516730 |
T |
|
| Q |
363 |
aaaccaagaaatgaagggtgatttggtctttgtaacatattgctattatttggaaaaacagttgcagtaggaacttcaatattgcttccttgcttgttaa |
462 |
Q |
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| T |
4516729 |
aaaccaagaaatgaagggtgatttggtctttgtaacatattgttattatttggaaaaacagttgcagtaggaacttcaatattgcttccttgcttgttaa |
4516630 |
T |
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| Q |
463 |
tattttcctcttcttgagtactatttatcaagtaatttggtttatcattaaccaattcccttgatacttctttagggtttgatttccaagtagaattttg |
562 |
Q |
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| T |
4516629 |
tattttcctcttcttgagtactattcatcaagtaatttggtttatcattaaccaattcccttgatacttctttagggtttgatttccaagtagaattttg |
4516530 |
T |
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| Q |
563 |
acttgaagttgaaccttcccaatgaatattgttcctattgaaattgaacaattgttgattgttgagttcattagaagatggaaaaccaaagttgaaattt |
662 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4516529 |
acttgaagttgaaccttcccaatgaatattgttcctattgaaattgaacaattgttgattgttgagttcattagaagatggaaaaccaaagttgaaattt |
4516430 |
T |
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| Q |
663 |
gttcctacaggtgaaaaattaggtaatggtggaagttgatcaatatcttgtttagctgcattgagcaa |
730 |
Q |
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| T |
4516429 |
gttcctacaggtgaaaaattaggtaatggtggaagttgatcaatatcttgtttagctgcattgagcaa |
4516362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 4517072 - 4516991
Alignment:
| Q |
17 |
attttctctgctgttttgtagaaatttggccaaactgaaggatggattgttgagagaattagtcattggattctgagaagaa |
98 |
Q |
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| T |
4517072 |
attttctctgctgttttgtagaaatttggccaaactgaaggatggattgttgagagaattagtcattggattctgagaagaa |
4516991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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