View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_low_14 (Length: 390)
Name: NF2442_low_14
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 28 - 372
Target Start/End: Original strand, 6329477 - 6329821
Alignment:
| Q |
28 |
agaagcaaagggcttgtggatggaatatctcttgggaagttacaatcttatactcgtgatttcagtttattattctcttctacctcttcctcttttggca |
127 |
Q |
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| T |
6329477 |
agaatcaatgggcttgtggatggaatatctcttgggaagttacaatcttatactcgtgatttcagtttattattctcttctacctcttcctcttttggca |
6329576 |
T |
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| Q |
128 |
agagatgccaattggttagtttatgattatgggttactactaagtttggcttttaatgaaagcattgtgatttttcttttactttggcaatttaatttgg |
227 |
Q |
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| T |
6329577 |
agagatgccaattggttagtttatgattatgggttactactaagtttggcttttaatgaaagcattgtgatttttcttttactttggcaatttaatttgg |
6329676 |
T |
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| Q |
228 |
ttcatggcagagcatcactccaatttttaaagttcatgatgacacagtaaagacaacaaatatgagccctagatcaacaaaacacaagtgctgattgaaa |
327 |
Q |
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| T |
6329677 |
ttcatggcagagcatcactccaatttttaaagttcatgatgacacagtaaagacaacaaatatgagccctagatcaacaaaacacaagtgctgattgaaa |
6329776 |
T |
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| Q |
328 |
ttgatcaacaatgatgcttctcaatagttactactagacatacgt |
372 |
Q |
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| T |
6329777 |
ttgatcaacaaagatgcttctcaatagttactactagacatacgt |
6329821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 49072747 - 49072686
Alignment:
| Q |
205 |
tttactttggcaatttaatttggttcatggcagagcatcactccaatttttaaagttcatga |
266 |
Q |
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| T |
49072747 |
tttacttttgcaaattaatttggctcatgaaagagcatcactccactttttaaggtttatga |
49072686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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