View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_low_15 (Length: 385)
Name: NF2442_low_15
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 365
Target Start/End: Complemental strand, 10801621 - 10801265
Alignment:
| Q |
10 |
attatacttgagtttcgcatagttctttaaattacaaacattagatgctttgaccctttaannnnnnnnct-acattcaattttgatcccttaaattgta |
108 |
Q |
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| T |
10801621 |
attatatttgagtttcgcttagttctttaaattacaaacattagatgctttgaccctttaattttttttcttacattcaattttgatcccttaaattgta |
10801522 |
T |
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| Q |
109 |
ttacgttcatatgttgatcaattaagtttcaagcatataagatatttcaatcccttaagttacaagtggataaataact-atttttctctatcaatctct |
207 |
Q |
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| T |
10801521 |
ttacgttcatatgttgatcaattaagtttcaagcatataagatatttcaatcccttaagttacaagtg-ataaataagttaattttctctatcaatctct |
10801423 |
T |
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| Q |
208 |
tagtatttgtaacttaattgatcaaaagtgtttaaagttaatgacttaatggaccaaagtatataacatttgtaacttaacaaccaaattgaacaagaaa |
307 |
Q |
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| T |
10801422 |
tagtatttgtaacttaattgatcaaaagtgtttaaagttaatgacttagtggaccaaagtctataacatttgtaacttaacaaccaaattgaacaagaaa |
10801323 |
T |
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| Q |
308 |
aaagtacaaagagactaaggtgtgtaacatttgtaacttaatagaacaaaattaaacc |
365 |
Q |
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| T |
10801322 |
aaagtacaaagagactaaggtgtgtaacatttgtaacttaatagaacaaaattaaacc |
10801265 |
T |
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