View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_low_17 (Length: 384)
Name: NF2442_low_17
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 9e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 210 - 373
Target Start/End: Complemental strand, 49187519 - 49187356
Alignment:
| Q |
210 |
aagtaatttttgagcttaccaggaagctgaaaccggtgacaccagcaaaggaaatggctaaggcggcactagagagatagagttcacccaagtgaccaac |
309 |
Q |
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| T |
49187519 |
aagtaatttttgagcttaccaggaagctgaaaccggtgacaccagcaaaggaaatggctaaggcggcactagagagatagagttcacctaagtgaccaac |
49187420 |
T |
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| Q |
310 |
aatcatgatggatacaacttgtaaaagatattgtgaagatgttacagctaccataggacctgat |
373 |
Q |
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| T |
49187419 |
aatcatgatggacacaacttgtaaaagatattgtgaagatgttacagctaccataggacctgat |
49187356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 49187716 - 49187575
Alignment:
| Q |
13 |
taggcaaccaaataggagtataatcaactaatcaagaagctagttataagtacacttcnnnnnnnnnnnnnnnnnctaattataagtagtttcaaatcaa |
112 |
Q |
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| T |
49187716 |
taggcaaccaaataggagtataatcaactaatcaagaagctaattataagtacacttcaaaacaaaaacaaaaaactaattataaatagtttcaaatcaa |
49187617 |
T |
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| Q |
113 |
aattttgaattgattatgcatttgcactctaattttcaacta |
154 |
Q |
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| T |
49187616 |
aattttgaattgattatgcatttgcactctaattttcaacta |
49187575 |
T |
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