View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2442_low_18 (Length: 365)
Name: NF2442_low_18
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 1960179 - 1960502
Alignment:
| Q |
18 |
tgtcaaacaatccttgcctcacattttctgtgataaaggattacattgctcggaagcttgagcaggaatcaaagatgattgaggacgaacaacaagctat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |
|
|
| T |
1960179 |
tgtcaaacaatccttgcctcacattttctgtgataaaggattacattgctcggaagcttgagcaggaatcaaagatgattgaggacgat-aagaa--tat |
1960275 |
T |
|
| Q |
118 |
taagaaatatcaggttggtttgatattattcttaactttatttgataacttatgtatttgtctgtctgttcatcttgtttccattgcatataataaatca |
217 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1960276 |
ta-------tcaggttggtttgatattattcttaactttatttgataacttatgtatttgtctgtctgttcatcttgtttccattgcatataacaaatca |
1960368 |
T |
|
| Q |
218 |
ctgttttcatgttttctgatatttttacattactaacaacataaagaaaagtatgatgatttccatacaataaacagggatagtggaaaagactatggtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1960369 |
ctgttttcatgttttctgatatttttacattactaacaacataaagaaaagtatgatgatttccatacaataaacagggatagtggaaaagactatggtt |
1960468 |
T |
|
| Q |
318 |
tagttatgaacaattttcgcaaaagtgtgatgat |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1960469 |
tagttatgaacaattttcgcaaaagtgtgatgat |
1960502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 5896884 - 5897001
Alignment:
| Q |
18 |
tgtcaaacaatccttgcctcacattttctgtgataaaggattacattgctcggaagcttgagcaggaatcaaagatgattgaggacgaacaacaagctat |
117 |
Q |
| |
|
||||||| || |||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| || | ||||||||| |
|
|
| T |
5896884 |
tgtcaaaaaacccttgcctcacactttcagtgatcaaggattacattgctcggaagcttgagcaggaatcaaaggtgattgaggaggaccgacaagctat |
5896983 |
T |
|
| Q |
118 |
taagaaatatcaggttgg |
135 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
5896984 |
tgagaaatatcaggttgg |
5897001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 327
Target Start/End: Original strand, 5897143 - 5897205
Alignment:
| Q |
265 |
aaagtatgatgatttccatacaataaacagggatagtggaaaagactatggtttagttatgaa |
327 |
Q |
| |
|
|||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
5897143 |
aaagcatgatgatttccatacaatagacaccgatagtggataagactatggtttagttatgaa |
5897205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 5897030 - 5897063
Alignment:
| Q |
147 |
tcttaactttatttgataacttatgtatttgtct |
180 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
5897030 |
tcttaactttatttgatagcttatgtatttgtct |
5897063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University