View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_low_20 (Length: 341)
Name: NF2442_low_20
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 5374445 - 5374757
Alignment:
| Q |
19 |
cacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaacaaagtcaagtaatcattggtattcttgaca |
118 |
Q |
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| T |
5374445 |
cacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaacaaagtcaagtaatcattggtattcttgaca |
5374544 |
T |
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| Q |
119 |
ctggtatatggccagagctaaaaagcttagatgacacaggactaggtccaataccaagtaattggaaaggtgtatgtgaaactggtaacaacatgaattc |
218 |
Q |
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| T |
5374545 |
ctggtatatggccagagctaaaaagcttagatgacacaggactaggtccaataccaagtaattggaaaggtgtatgtgaaactggtaacaacatgaattc |
5374644 |
T |
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| Q |
219 |
gtcacactgcaacaaaaaactcataggtgcaaggtttttcttaaaagggtatgaagcagcacttggtccaatagatgaaacaacagaatcaaaatcagct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374645 |
atcacactgcaacaaaaaactcataggtgcaaggtttttcttaaaagggtatgaagcagcacttggtccaatagatgaaacaacagaatcaaaatcagct |
5374744 |
T |
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| Q |
319 |
agagatgatgatg |
331 |
Q |
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||||||||||||| |
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| T |
5374745 |
agagatgatgatg |
5374757 |
T |
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