View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2442_low_21 (Length: 328)

Name: NF2442_low_21
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2442_low_21
NF2442_low_21
[»] chr4 (2 HSPs)
chr4 (150-270)||(31521246-31521366)
chr4 (181-270)||(26460133-26460222)
[»] chr1 (8 HSPs)
chr1 (150-270)||(23560117-23560237)
chr1 (179-320)||(11561534-11561661)
chr1 (17-88)||(11564173-11564245)
chr1 (17-82)||(34903762-34903828)
chr1 (33-82)||(15122928-15122977)
chr1 (33-82)||(15147116-15147165)
chr1 (22-82)||(34903956-34904017)
chr1 (23-82)||(43761237-43761297)
[»] chr3 (5 HSPs)
chr3 (151-260)||(38340055-38340164)
chr3 (17-82)||(27532419-27532485)
chr3 (46-84)||(4144655-4144693)
chr3 (17-82)||(31720923-31720989)
chr3 (33-82)||(494702-494751)
[»] chr5 (4 HSPs)
chr5 (149-252)||(30311912-30312015)
chr5 (17-82)||(17762749-17762814)
chr5 (17-85)||(21118247-21118316)
chr5 (46-82)||(22493059-22493095)
[»] scaffold1825 (1 HSPs)
scaffold1825 (150-214)||(102-166)
[»] chr7 (8 HSPs)
chr7 (150-214)||(37634310-37634374)
chr7 (17-82)||(12308420-12308486)
chr7 (17-82)||(28644661-28644727)
chr7 (33-82)||(44603685-44603734)
chr7 (23-88)||(21666181-21666247)
chr7 (33-82)||(44606723-44606772)
chr7 (17-88)||(28644829-28644901)
chr7 (23-82)||(29239148-29239208)
[»] chr6 (6 HSPs)
chr6 (35-82)||(12262262-12262309)
chr6 (17-82)||(14908824-14908890)
chr6 (33-82)||(11992176-11992225)
chr6 (39-82)||(12262086-12262129)
chr6 (46-82)||(5428581-5428617)
chr6 (34-82)||(8681647-8681695)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 150 - 270
Target Start/End: Original strand, 31521246 - 31521366
Alignment:
Q  150 gcgtttggacactttaccacgttctgcatattcacgttttcttctatccaaacatcacagcaaaaacgagactcacttttagagaagaaaacgcaggttt 249  Q
    |||||| ||||||||| |||||||| || | ||||||||||||||||||||||| |||| ||||||| |||||||| |||||||||||||||||||||||    
T  31521246 gcgtttcgacactttatcacgttctacagaatcacgttttcttctatccaaacaccacaacaaaaacaagactcacgtttagagaagaaaacgcaggttt 31521345  T
Q  250 ggaggttgtaaacgcacaacc 270  Q
    |||||||||||||||||||||    
T  31521346 ggaggttgtaaacgcacaacc 31521366  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 26460133 - 26460222
Alignment:
Q  181 tcacgttttcttctatccaaacatcacagcaaaaacgagactcacttttagagaagaaaacgcaggtttggaggttgtaaacgcacaacc 270  Q
    ||||||||||||||||||||| | |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  26460133 tcacgttttcttctatccaaataccacagcaaaaacaagactcacgtttagagaagaaaacacaggtttggaggttgtaaacgcacaacc 26460222  T

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Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 150 - 270
Target Start/End: Original strand, 23560117 - 23560237
Alignment:
Q  150 gcgtttggacactttaccacgttctgcatattcacgttttcttctatccaaacatcacagcaaaaacgagactcacttttagagaagaaaacgcaggttt 249  Q
    |||||||||||||| | ||||||||||| | ||||||||||||||||||||||| ||||| |||||| |||||||| |||| ||||||||||||||||||    
T  23560117 gcgtttggacacttcatcacgttctgcacaatcacgttttcttctatccaaacaccacagaaaaaacaagactcacgtttatagaagaaaacgcaggttt 23560216  T
Q  250 ggaggttgtaaacgcacaacc 270  Q
    ||||||||||||| |||||||    
T  23560217 ggaggttgtaaactcacaacc 23560237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 179 - 320
Target Start/End: Complemental strand, 11561661 - 11561534
Alignment:
Q  179 attcacgttttcttctatccaaac-atcacagcaaaaacgagactcacttttagagaagaaaacgcaggtttggaggttgtaaacgcacaacctgaatac 277  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||               |||||||    
T  11561661 attcacgttttcttctatccaaaatatcacagcaaaaacgagactcacgtttagagaagaaaacgcaggtttggaggt---------------tgaatac 11561577  T
Q  278 tttttgaagagagtgcatatagctcactgcactacttcttctc 320  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11561576 tttttgaagagagtgcatatagctcactgcactacttcttctc 11561534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 11564245 - 11564173
Alignment:
Q  17 ataaatacataaaatc-gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaagttatt 88  Q
    |||| |||| |||||| |||||||||||||||||||||||||| |||||||||||||||||  ||||||||||    
T  11564245 ataagtacaaaaaatctgcaacgggtgcgatgcaaatattgaataatcttttgcatataaataaaaagttatt 11564173  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 34903762 - 34903828
Alignment:
Q  17 ataaatacataaaatc-gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||| ||||||||||| |||||||||| |||||||| |||||||| |||||||||||| ||||||||    
T  34903762 ataagtacataaaatctgcaacgggtgtgatgcaaacattgaacagtcttttgcatatgaaataaaa 34903828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 15122928 - 15122977
Alignment:
Q  33 gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    ||||||||||||||| |||||||||||  | |||||||||||||||||||    
T  15122928 gcaacgggtgcgatgtaaatattgaactgtgttttgcatataaaataaaa 15122977  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 15147116 - 15147165
Alignment:
Q  33 gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    ||||||||||||||| |||||||||||  | |||||||||||||||||||    
T  15147116 gcaacgggtgcgatgtaaatattgaactgtgttttgcatataaaataaaa 15147165  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 34903956 - 34904017
Alignment:
Q  22 tacataaaatcg-caacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||||||||||  ||||||||||| |||||| |||||||||| ||||| |||||||||||||    
T  34903956 tacataaaatctacaacgggtgcggtgcaaacattgaacaattttttgtatataaaataaaa 34904017  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 43761297 - 43761237
Alignment:
Q  23 acataaaatc-gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||||||||| ||||||||||||||| ||| |||||||| | ||||||| |||||||||||    
T  43761297 acataaaatctgcaacgggtgcgatgaaaacattgaacagtgttttgcaaataaaataaaa 43761237  T

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Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 38340164 - 38340055
Alignment:
Q  151 cgtttggacactttaccacgttctgcatattcacgttttcttctatccaaacatcacagcaaaaacgagactcacttttagagaagaaaacgcaggtttg 250  Q
    ||||||||||||||| ||||||||||| | |||| |||||||||||||||||| ||||| |||||| |||||||| |||| ||||||||||||||||||     
T  38340164 cgtttggacactttatcacgttctgcagaatcacattttcttctatccaaacaccacagaaaaaacaagactcacgtttatagaagaaaacgcaggttta 38340065  T
Q  251 gaggttgtaa 260  Q
     |||||||||    
T  38340064 aaggttgtaa 38340055  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 27532419 - 27532485
Alignment:
Q  17 ataaatacataaaatc-gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||| |||||| |||| ||||||| |||| ||||||||||||||| | |||||||||||||||||||    
T  27532419 ataagtacatataatctgcaacggatgcggtgcaaatattgaacagtgttttgcatataaaataaaa 27532485  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 4144693 - 4144655
Alignment:
Q  46 tgcaaatattgaacaatcttttgcatataaaataaaagt 84  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  4144693 tgcaaacattgaacaatgttttgcatataaaataaaagt 4144655  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 31720989 - 31720923
Alignment:
Q  17 ataaatacataaaatc-gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||| ||||||||| | |||| ||| ||| |||||| | ||||||||||||||||||||||||||||    
T  31720989 ataagtacataaaaactgcaaagggcgcggtgcaaacaatgaacaatcttttgcatataaaataaaa 31720923  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 494751 - 494702
Alignment:
Q  33 gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||||||||||| |||||| |||||||  | |||||||||||||||||||    
T  494751 gcaacgggtgcggtgcaaacattgaacggtgttttgcatataaaataaaa 494702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 30311912 - 30312015
Alignment:
Q  149 tgcgtttggacactttaccacgttctgcatattcacgttttcttctatccaaacatcacagcaaaaacgagactcacttttagagaagaaaacgcaggtt 248  Q
    ||||||||||||||| | || |||||||| | | ||||||||||||||||||||| ||||| |||||| |||||||| |||| |||||||||||||||||    
T  30311912 tgcgtttggacacttcatcatgttctgcacaatgacgttttcttctatccaaacaccacagaaaaaacaagactcacgtttatagaagaaaacgcaggtt 30312011  T
Q  249 tgga 252  Q
    ||||    
T  30312012 tgga 30312015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 17762749 - 17762814
Alignment:
Q  17 ataaatacataaaatc-gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||| ||||||||||| ||||||| |||| |||||| |||||||||| |||||||||||||||||||    
T  17762749 ataagtacataaaatctgcaacgg-tgcggtgcaaacattgaacaatgttttgcatataaaataaaa 17762814  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 21118247 - 21118316
Alignment:
Q  17 ataaatacataaaatc-gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaagtt 85  Q
    ||||| |||||||||| |||||||  ||||||||||| |||||| |  ||||||||||||||||||||||    
T  21118247 ataaacacataaaatctgcaacggacgcgatgcaaatgttgaacgacgttttgcatataaaataaaagtt 21118316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 22493095 - 22493059
Alignment:
Q  46 tgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||||||||||||| || |||||||||||||||||||    
T  22493095 tgcaaatattgaacgatgttttgcatataaaataaaa 22493059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1825 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold1825
Description:

Target: scaffold1825; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 166 - 102
Alignment:
Q  150 gcgtttggacactttaccacgttctgcatattcacgttttcttctatccaaacatcacagcaaaa 214  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||||||    
T  166 gcgtttggacactttatcacgttctgcagaatcacgttttcttctatccaaacaccacagcaaaa 102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 37634374 - 37634310
Alignment:
Q  150 gcgtttggacactttaccacgttctgcatattcacgttttcttctatccaaacatcacagcaaaa 214  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||||||    
T  37634374 gcgtttggacactttatcacgttctgcagaatcacgttttcttctatccaaacaccacagcaaaa 37634310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 12308420 - 12308486
Alignment:
Q  17 ataaatacataaaatc-gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||| ||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  12308420 ataagtacataaaatctgcaacgggtgcggtgcaaacattgaacaatcttttgcatataaaataaaa 12308486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 28644727 - 28644661
Alignment:
Q  17 ataaatacataaaatc-gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  28644727 ataagtacataaaatctgcaacgggtgcggtgcaaatattgaacaatcttttgcataaaaaataaaa 28644661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 44603685 - 44603734
Alignment:
Q  33 gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  44603685 gcaacgggtgcgatgcaaatattgaacagtcttttgcacataaaataaaa 44603734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 21666181 - 21666247
Alignment:
Q  23 acataaaatc-gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaagttatt 88  Q
    |||||||||| ||||||||||||||||||| ||||||  || ||||||||| |||||||||||||||    
T  21666181 acataaaatctgcaacgggtgcgatgcaaacattgaatgatgttttgcatagaaaataaaagttatt 21666247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 44606723 - 44606772
Alignment:
Q  33 gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  44606723 gcaacgggtgtggtgcaaatattgaacattcttttgcatataaaataaaa 44606772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 28644901 - 28644829
Alignment:
Q  17 ataaatacataaaatc-gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaagttatt 88  Q
    |||| ||||||||||| | ||||||||||||||||| || ||||| ||||||| ||| |||||||||||||||    
T  28644901 ataagtacataaaatctggaacgggtgcgatgcaaacatcgaacattcttttgaataaaaaataaaagttatt 28644829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 29239148 - 29239208
Alignment:
Q  23 acataaaatc-gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||||||||| |||||||||||| |||||| ||||||| || |||| ||||||||| ||||    
T  29239148 acataaaatctgcaacgggtgcggtgcaaacattgaacgatgttttacatataaaacaaaa 29239208  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 12262262 - 12262309
Alignment:
Q  35 aacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||||||| | |||||| ||||||||||||||||||||||||||||||    
T  12262262 aacgggtgtggtgcaaacattgaacaatcttttgcatataaaataaaa 12262309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 14908890 - 14908824
Alignment:
Q  17 ataaatacataaaatc-gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||| ||||||||||| ||||||| |||| |||||| |||||| | |||||||||||||||||||||    
T  14908890 ataagtacataaaatctgcaacggatgcggtgcaaacattgaatagtcttttgcatataaaataaaa 14908824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 11992225 - 11992176
Alignment:
Q  33 gcaacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||||||| | |||||||| |||||||||| |||||||||||||||||||    
T  11992225 gcaacgggagtgatgcaaacattgaacaatattttgcatataaaataaaa 11992176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 12262086 - 12262129
Alignment:
Q  39 ggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||||| |||||| |||||||||| |||||||||||||||||||    
T  12262086 ggtgcggtgcaaacattgaacaatgttttgcatataaaataaaa 12262129  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 5428581 - 5428617
Alignment:
Q  46 tgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||||||||||||| || |||||||||||||||||||    
T  5428581 tgcaaatattgaacgatgttttgcatataaaataaaa 5428617  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 8681647 - 8681695
Alignment:
Q  34 caacgggtgcgatgcaaatattgaacaatcttttgcatataaaataaaa 82  Q
    |||||||||||||||||| ||||||  || ||||| |||||||||||||    
T  8681647 caacgggtgcgatgcaaacattgaatgattttttgtatataaaataaaa 8681695  T

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