View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_low_22 (Length: 323)
Name: NF2442_low_22
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 6214806 - 6215124
Alignment:
| Q |
11 |
atgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagggtcgacattactgacctgcaaatttcatttaagaaga |
110 |
Q |
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| T |
6214806 |
atgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagggtcgacattactgacctgcaaatttcatttaagaaga |
6214905 |
T |
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| Q |
111 |
attttgtaattaatttcttatattcactattcagtaaactttattgtttatttttatccaacactttaaatttaatcagatagtctatccgttatttgtt |
210 |
Q |
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| T |
6214906 |
attttgtaattaatttcttatattcactattcagtaaactttattgtttaattttatccaacactttaaatttaatcagatagtctatccgttatttgtt |
6215005 |
T |
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| Q |
211 |
ataggttcatcaacc----------------------atctaagcagactactctactcgagctggttccgatttcgcatactataaatacaaaatagaa |
288 |
Q |
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| T |
6215006 |
ataggttcatcaaccatcagctaacttatcagacagaatctaagcagactactctactcgagctggttccgatttcgcatactataaatacaaaatagaa |
6215105 |
T |
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| Q |
289 |
tgcaacttacagagtaact |
307 |
Q |
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||||||||||||||||||| |
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| T |
6215106 |
tgcaacttacagagtaact |
6215124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 6207146 - 6207257
Alignment:
| Q |
11 |
atgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagggtcgacattactgacctgcaaatttcatttaagaaga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6207146 |
atgaagagccttttgaacttctgggagatttaaataggcagcggtataatcttcagcacaagggtcgatattactgacctgcaaatttcatttaagaag- |
6207244 |
T |
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| Q |
111 |
attttgtaattaa |
123 |
Q |
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||||||||||||| |
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| T |
6207245 |
attttgtaattaa |
6207257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 6207378 - 6207456
Alignment:
| Q |
229 |
taagcagactactctactcgagctggttccgatttcgcatactataaatacaaaatagaatgcaacttacagagtaact |
307 |
Q |
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| T |
6207378 |
taagcagactaatctactcgagctagttccgattttgcataccatatatacaaaaaagaatgtaacttacaaagtaact |
6207456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 6207293 - 6207340
Alignment:
| Q |
181 |
tttaatcagatagtctatccgttatttgttataggttcatcaaccatc |
228 |
Q |
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| T |
6207293 |
tttaatcagatagtctatccgttatttgctatagattcatctaccatc |
6207340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 6177336 - 6177463
Alignment:
| Q |
11 |
atgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagggtcgacattactgacctgcaa-------atttcattt |
103 |
Q |
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||||||||||| |||||||| || || |||||||| | | | ||||||||||||| ||||||||| | || ||| ||||||| ||||||||| |
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| T |
6177336 |
atgaagagcctcttgaactttaggtaggtttaaataagcattagtataatcttcagaacaagggtcaaaatcactaccctgcaatgttgatatttcattt |
6177435 |
T |
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| Q |
104 |
aagaagaattttgtaattaatttcttat |
131 |
Q |
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|||||| |||||| |||||||||||||| |
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| T |
6177436 |
aagaagcattttgcaattaatttcttat |
6177463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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