View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2442_low_27 (Length: 270)
Name: NF2442_low_27
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 254
Target Start/End: Complemental strand, 13884136 - 13883888
Alignment:
| Q |
5 |
caagatcttgtcacaagaaaattttgtgctaccactccttagaaacaaataactcatttgtcatttcattccatttttgtaaccaagttcctttgcctta |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13884136 |
caagatcttgtcacaagaaaattttgtgctagcactccttagaaacaaataactc-tatgtcatttcattccatttttgtaaccaagttcctttgcctta |
13884038 |
T |
|
| Q |
105 |
tgtcacatttacatgcagtcaagcatgaacatacctgagaatgctactaatttcactagctgctgttggagctcttccctgcttcgtttccctatgcaac |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13884037 |
tgtcacatttacatgcagtcaagcatgaacatacctgagaatgctactaatttcactggctgctgttggagctcttccctgcttcgtttccctatgcaac |
13883938 |
T |
|
| Q |
205 |
gctccaattttcgccaacggtaagtacttcgattcagtatacttcagaat |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13883937 |
actccaattttcgccaacggtaagtacttcgattcagtatacttcagaat |
13883888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 254
Target Start/End: Complemental strand, 14024261 - 14024013
Alignment:
| Q |
5 |
caagatcttgtcacaagaaaattttgtgctaccactccttagaaacaaataactcatttgtcatttcattccatttttgtaaccaagttcctttgcctta |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14024261 |
caagatcttgtcacaagaaaattttgtgctagcactccttagaaacaaataactc-tatgtcatttcattccatttttgtaaccaagttcctttgcctta |
14024163 |
T |
|
| Q |
105 |
tgtcacatttacatgcagtcaagcatgaacatacctgagaatgctactaatttcactagctgctgttggagctcttccctgcttcgtttccctatgcaac |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14024162 |
tgtcacatttacatgcagtcaagcatgaacatacctgagaatgctactaatttcactggctgctgttggagctcttccctgcttcgtttccctatgcaac |
14024063 |
T |
|
| Q |
205 |
gctccaattttcgccaacggtaagtacttcgattcagtatacttcagaat |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14024062 |
actccaattttcgccaacggtaagtacttcgattcagtatacttcagaat |
14024013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 97 - 254
Target Start/End: Complemental strand, 7684727 - 7684570
Alignment:
| Q |
97 |
ttgccttatgtcacatttacatgcagtcaagcatgaacatacctgagaatgctactaatttcactagctgctgttggagctcttccctgcttcgtttccc |
196 |
Q |
| |
|
||||||| | |||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| |
|
|
| T |
7684727 |
ttgccttgtttcacatttacattcagtcaagcatgaccatacctgagaatgctactaatttcactggttgctgttggatctcttccctgcttcgtttccg |
7684628 |
T |
|
| Q |
197 |
tatgcaacgctccaattttcgccaacggtaagtacttcgattcagtatacttcagaat |
254 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
7684627 |
tatgcaatcattcaattttcgccaacggtaagtactttcatttcgtatactgcagaat |
7684570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University