View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_low_28 (Length: 248)
Name: NF2442_low_28
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 40995037 - 40995260
Alignment:
| Q |
9 |
aggagcagagaaatcaaatgttaaatctttcacgccctgttgtgtcgcaaaagcaacacaaccttcaattgtttccccacaagtttgagggtttgaaatc |
108 |
Q |
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| T |
40995037 |
aggatcagagaaatcaaatgttaaatctttcacgccctgttgtgtcgcaaaagcaacacaaccttcaattgtttccccacaagtttgagggtttgaaatc |
40995136 |
T |
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| Q |
109 |
gtgagagaaaacttgttgatgtcatggctagtgaactgcgcaatccaatttgtgatgaagtcgacgaaaacttttctctgcgcttgtttgattttatcgg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40995137 |
gtgagagaaaacttgttgatgtcatggctagtgaactgcgcaatccaatttgtgataaagtcgaggaaaacttttctctgcgcttgtttgattttatcgg |
40995236 |
T |
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| Q |
209 |
aatttgaatcaacgaagaagtttt |
232 |
Q |
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|| ||||||||||||||||||||| |
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| T |
40995237 |
aacttgaatcaacgaagaagtttt |
40995260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 40987229 - 40987446
Alignment:
| Q |
15 |
agagaaatcaaatgttaaatctttcacgccctgttgtgtcgcaaaagcaacacaaccttcaattgtttccccacaagtttgagggtttgaaatcgtgaga |
114 |
Q |
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||||||||||| |||||||||||||| ||| |||||||| | ||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
40987229 |
agagaaatcaagagttaaatctttcacaccccgttgtgtcacgaaagcaacacaacgttcgattgtttccccacaagtttgagggtttgaaacagtgaga |
40987328 |
T |
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| Q |
115 |
gaaaacttgttgatgtcatggctagtgaactgcgcaatccaatttgtgatgaagtcgacgaaaacttttctctgcgcttgtttgattttatcggaatttg |
214 |
Q |
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| T |
40987329 |
gaaaacttgttaattcgacggctagtgaattgtgcaatccaatttttgatgaagtcgatgaaaacttctctctgtccttgtttgatttcacccgaagttg |
40987428 |
T |
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| Q |
215 |
aatcaacgaagaagtttt |
232 |
Q |
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||||||| || ||||||| |
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| T |
40987429 |
aatcaacaaaaaagtttt |
40987446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 31463162 - 31463355
Alignment:
| Q |
9 |
aggagcagagaaatcaaatgttaaatctttcacgccctgttgtgtcgcaaaagcaacacaaccttcaattgtttccccacaagtttgagggtttgaaatc |
108 |
Q |
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|||| |||||||||||| |||||||||||||| || ||||| |||| |||||||||||| ||||||||||||||||||| ||||||||||||||| | |
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| T |
31463162 |
aggatcagagaaatcaagagttaaatctttcacaccgcgttgtatcgcgaaagcaacacaatgttcaattgtttccccacaaatttgagggtttgaaacc |
31463261 |
T |
|
| Q |
109 |
gtgagagaaaacttgttgatgtcatggctagtgaactgcgcaatccaatttgtgatgaagtcgacgaaaacttttctctgcgcttgtttgattt |
202 |
Q |
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| T |
31463262 |
atgagagaaaatttgttaatgcgacggctagacaagtgtgcaatccaatttgtgatgaagttgatgaaaacttctctttgtgcttgtttgattt |
31463355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 232
Target Start/End: Complemental strand, 31462519 - 31462345
Alignment:
| Q |
58 |
aaagcaacacaaccttcaattgtttccccacaagtttgagggtttgaaatcgtgagagaaaacttgttgatgtcatggctagtgaactgcgcaatccaat |
157 |
Q |
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||||||||| ||| ||| |||||||| ||||||||||||||||| ||||||||||||||| ||||| ||| | |||||||| | || |||||||||| |
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| T |
31462519 |
aaagcaacaaaacattcgattgtttctccacaagtttgagggttcaaaatcgtgagagaaattttgttaatgcaacggctagtgtagtgtgcaatccaat |
31462420 |
T |
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| Q |
158 |
ttgtgatgaagtcgacgaaaacttttctctgcgcttgtttgattttatcggaatttgaatcaacgaagaagtttt |
232 |
Q |
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| T |
31462419 |
ttgtgatgaagttgttgtaaacttctctttgtgcttgtttgatttcatctgaagttgaatcgacaaaaaagtttt |
31462345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 31477205 - 31477391
Alignment:
| Q |
16 |
gagaaatcaaatgttaaatctttcacgccctgttgtgtcgcaaaagcaacacaaccttcaattgtttccccacaagtttgagggtttgaaatcgtgagag |
115 |
Q |
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|||||||||| |||||||||||||| | ||||| |||| ||||||||| ||| ||| |||||||||| ||||||||||||||| |||| | |||| | |
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| T |
31477205 |
gagaaatcaagagttaaatctttcacacagcgttgtatcgcgaaagcaacataacgttcgattgtttcccaacaagtttgagggttcgaaaccatgaggg |
31477304 |
T |
|
| Q |
116 |
aaaacttgttgatgtcatggctagtgaactgcgcaatccaatttgtgatgaagtcgacgaaaacttttctctgcgcttgtttgattt |
202 |
Q |
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|||| ||||| || | | ||||||||| || || ||||||||||||||||| | || |||||||| ||| || || |||||||||| |
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| T |
31477305 |
aaaatttgttaatatgacagctagtgaagtgtgcgatccaatttgtgatgaaattgatgaaaacttctctttgtgcctgtttgattt |
31477391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 31476850 - 31476661
Alignment:
| Q |
14 |
cagagaaatcaaatgttaaatctttcacgccctgttgtgtcgcaaaagcaacacaaccttcaatt-gtttccccacaagtttgagggtttgaaatcgtga |
112 |
Q |
| |
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||||||||||||| ||| |||||| || || |||||||| | ||||||||| ||| ||| ||| |||||||| |||||||||| ||| ||| ||||| |
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| T |
31476850 |
cagagaaatcaaaagtttaatcttccatacctcgttgtgtcacgaaagcaacaaaacattcgatttgtttccccgcaagtttgagtgttcaaaaccgtga |
31476751 |
T |
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| Q |
113 |
gagaaaacttgttgatgtcatggctagtgaactgcgcaatccaatttgtgatgaagtcgacgaaaacttttctctgcgcttgtttgattt |
202 |
Q |
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|||||| || || |||| | ||| |||||| || |||||||||||||||||||||| | ||||| || | | || ||||||||||||| |
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| T |
31476750 |
gagaaatttttttaatgtgacggccagtgaagtgtgcaatccaatttgtgatgaagttgttgaaaatttatttttgtgcttgtttgattt |
31476661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 232
Target Start/End: Complemental strand, 21179747 - 21179544
Alignment:
| Q |
29 |
ttaaatctttcacgccctgttgtgtcgcaaaagcaacacaaccttcaattgtttccccacaagtttgagggtttgaaatcgtgagagaaaacttgttgat |
128 |
Q |
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|||| |||||||| ||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||| || |||| ||||||||||||| |||| || |
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| T |
21179747 |
ttaactctttcactccccgttgtatcgtgaaagcaacacaacgctcaattgtttccccacaagtttgaggattcgaaaccgtgagagaaaacctgttaat |
21179648 |
T |
|
| Q |
129 |
gtcatggctagtgaactgcgcaatccaatttgtgatgaagtcgacgaaaacttttctctgcgcttgtttgattttatcggaatttgaatcaacgaagaag |
228 |
Q |
| |
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| | |||||| || || || |||||| | || || |||| || |||||||||||| || |||||||| ||| ||| ||| ||||||| || |||||| |
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| T |
21179647 |
ggcgcggctaggaaagtgtgcgatccaactcgtaataaagttgatgaaaacttttctttgttcttgtttgttttcatcagaagttgaatccacaaagaag |
21179548 |
T |
|
| Q |
229 |
tttt |
232 |
Q |
| |
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|||| |
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|
| T |
21179547 |
tttt |
21179544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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