View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2442_low_3 (Length: 526)

Name: NF2442_low_3
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2442_low_3
NF2442_low_3
[»] chr6 (18 HSPs)
chr6 (4-526)||(3798211-3798726)
chr6 (368-526)||(3793772-3793933)
chr6 (244-353)||(3806041-3806150)
chr6 (263-375)||(3793531-3793643)
chr6 (366-521)||(3806356-3806502)
chr6 (42-157)||(20398250-20398365)
chr6 (49-157)||(1814750-1814858)
chr6 (1-114)||(17942550-17942665)
chr6 (4-157)||(26860873-26861029)
chr6 (40-132)||(8235773-8235865)
chr6 (1-132)||(13757313-13757447)
chr6 (1-93)||(14287093-14287188)
chr6 (77-146)||(24120645-24120714)
chr6 (1-132)||(1605684-1605818)
chr6 (3-114)||(15064750-15064864)
chr6 (1-132)||(8626587-8626722)
chr6 (44-116)||(847829-847901)
chr6 (80-132)||(4129614-4129666)
[»] chr3 (24 HSPs)
chr3 (1-157)||(24064329-24064485)
chr3 (1-170)||(18355867-18356039)
chr3 (14-157)||(48436345-48436489)
chr3 (1-157)||(19896942-19897099)
chr3 (1-157)||(54086659-54086817)
chr3 (1-157)||(6901669-6901825)
chr3 (13-157)||(40228223-40228361)
chr3 (1-132)||(3383181-3383316)
chr3 (6-132)||(53559648-53559777)
chr3 (40-127)||(37293559-37293643)
chr3 (1-146)||(23087954-23088103)
chr3 (13-114)||(43750254-43750358)
chr3 (15-96)||(46188886-46188970)
chr3 (77-114)||(19241723-19241760)
chr3 (1-132)||(46694147-46694282)
chr3 (84-132)||(26783661-26783709)
chr3 (60-132)||(48820508-48820580)
chr3 (1-114)||(13364948-13365065)
chr3 (77-132)||(29375317-29375372)
chr3 (77-132)||(31873900-31873955)
chr3 (1-132)||(198960-199095)
chr3 (77-114)||(13703397-13703434)
chr3 (50-118)||(1455202-1455270)
chr3 (40-132)||(36881428-36881520)
[»] chr5 (21 HSPs)
chr5 (1-170)||(734338-734510)
chr5 (1-132)||(39070988-39071122)
chr5 (1-132)||(11319664-11319796)
chr5 (13-157)||(16054229-16054376)
chr5 (49-132)||(11795320-11795403)
chr5 (15-169)||(1056625-1056778)
chr5 (13-119)||(21638889-21638996)
chr5 (45-132)||(30402999-30403086)
chr5 (1-113)||(25683285-25683400)
chr5 (40-147)||(15629284-15629391)
chr5 (77-140)||(16983442-16983505)
chr5 (14-118)||(11797663-11797772)
chr5 (41-157)||(26168058-26168173)
chr5 (77-140)||(37900652-37900715)
chr5 (1-132)||(40886647-40886782)
chr5 (77-169)||(10285058-10285150)
chr5 (45-104)||(9747178-9747237)
chr5 (1-132)||(12806890-12807025)
chr5 (13-57)||(1056397-1056442)
chr5 (40-132)||(30720529-30720621)
chr5 (40-132)||(36561136-36561228)
[»] chr4 (20 HSPs)
chr4 (1-157)||(6128961-6129120)
chr4 (1-132)||(19692828-19692962)
chr4 (1-132)||(19703413-19703547)
chr4 (47-157)||(48652379-48652489)
chr4 (1-169)||(32543585-32543756)
chr4 (14-127)||(18507308-18507423)
chr4 (1-132)||(22321305-22321439)
chr4 (1-132)||(40122524-40122657)
chr4 (1-132)||(12071666-12071800)
chr4 (1-132)||(21310530-21310661)
chr4 (77-157)||(50839043-50839123)
chr4 (45-100)||(26676649-26676704)
chr4 (77-114)||(31892417-31892454)
chr4 (1-132)||(50767969-50768102)
chr4 (13-92)||(20714426-20714508)
chr4 (59-127)||(51777771-51777838)
chr4 (1-132)||(25704756-25704891)
chr4 (1-132)||(24706284-24706419)
chr4 (40-132)||(14261192-14261284)
chr4 (1-132)||(20249051-20249185)
[»] chr1 (24 HSPs)
chr1 (1-169)||(51064754-51064925)
chr1 (1-157)||(34458736-34458895)
chr1 (40-157)||(40261297-40261414)
chr1 (1-171)||(31003785-31003958)
chr1 (45-156)||(24876714-24876825)
chr1 (1-169)||(23526345-23526516)
chr1 (1-116)||(1837881-1838001)
chr1 (13-169)||(27143014-27143171)
chr1 (30-132)||(40052501-40052604)
chr1 (13-114)||(31061514-31061614)
chr1 (40-157)||(14925612-14925727)
chr1 (40-100)||(3657222-3657282)
chr1 (40-140)||(46771786-46771886)
chr1 (40-114)||(284481-284555)
chr1 (62-115)||(14350528-14350581)
chr1 (1-132)||(40783694-40783829)
chr1 (40-132)||(321774-321866)
chr1 (13-111)||(18396812-18396913)
chr1 (40-132)||(23166888-23166980)
chr1 (45-157)||(25929251-25929363)
chr1 (77-157)||(27210967-27211047)
chr1 (1-171)||(47037850-47038024)
chr1 (1-132)||(23045316-23045451)
chr1 (77-114)||(40562341-40562378)
[»] scaffold0168 (1 HSPs)
scaffold0168 (45-169)||(7821-7945)
[»] chr2 (15 HSPs)
chr2 (4-157)||(34242083-34242239)
chr2 (1-157)||(19976436-19976593)
chr2 (63-169)||(32838929-32839035)
chr2 (1-169)||(39561895-39562059)
chr2 (55-171)||(40756909-40757025)
chr2 (45-122)||(28110142-28110219)
chr2 (1-132)||(22388175-22388307)
chr2 (40-132)||(37284555-37284646)
chr2 (8-152)||(1002748-1002895)
chr2 (1-132)||(39938275-39938410)
chr2 (14-157)||(4917880-4918026)
chr2 (52-166)||(36447418-36447532)
chr2 (1-132)||(3519013-3519147)
chr2 (1-132)||(1646392-1646527)
chr2 (1-132)||(23366894-23367029)
[»] scaffold0056 (1 HSPs)
scaffold0056 (40-162)||(71231-71353)
[»] chr8 (25 HSPs)
chr8 (1-157)||(35866719-35866878)
chr8 (40-169)||(45400770-45400899)
chr8 (14-157)||(26628828-26628974)
chr8 (1-140)||(28562527-28562669)
chr8 (13-127)||(28568036-28568153)
chr8 (13-127)||(28575629-28575746)
chr8 (14-140)||(20546322-20546448)
chr8 (25-115)||(27563921-27564012)
chr8 (54-127)||(10180910-10180983)
chr8 (77-146)||(30906712-30906781)
chr8 (1-132)||(13880992-13881126)
chr8 (1-132)||(27035101-27035235)
chr8 (1-132)||(43275436-43275571)
chr8 (1-132)||(30999561-30999695)
chr8 (13-90)||(39151522-39151600)
chr8 (1-132)||(7147018-7147153)
chr8 (1-132)||(11174260-11174395)
chr8 (1-132)||(40058340-40058475)
chr8 (1-132)||(40918768-40918903)
chr8 (40-132)||(2539967-2540059)
chr8 (1-114)||(11646380-11646497)
chr8 (45-132)||(37510423-37510510)
chr8 (40-114)||(3585599-3585673)
chr8 (40-114)||(36068228-36068302)
chr8 (1-132)||(37345676-37345811)
[»] chr7 (16 HSPs)
chr7 (1-144)||(3091622-3091765)
chr7 (1-157)||(16662199-16662358)
chr7 (1-157)||(17636559-17636718)
chr7 (40-154)||(24456780-24456894)
chr7 (64-157)||(28200472-28200565)
chr7 (30-127)||(27941026-27941124)
chr7 (64-169)||(16360549-16360653)
chr7 (1-132)||(25614390-25614525)
chr7 (77-140)||(7743427-7743490)
chr7 (61-127)||(37983300-37983366)
chr7 (40-114)||(40349110-40349184)
chr7 (1-132)||(10981613-10981748)
chr7 (1-132)||(27813916-27814051)
chr7 (1-132)||(36453161-36453296)
chr7 (40-132)||(47110598-47110690)
chr7 (40-122)||(8380086-8380168)
[»] scaffold0076 (1 HSPs)
scaffold0076 (2-122)||(15370-15491)
[»] scaffold0060 (1 HSPs)
scaffold0060 (13-117)||(10862-10967)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-132)||(65202-65335)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-132)||(304-437)
[»] scaffold0343 (1 HSPs)
scaffold0343 (16-163)||(6907-7056)
[»] scaffold0939 (1 HSPs)
scaffold0939 (61-116)||(1110-1165)
[»] scaffold1770 (1 HSPs)
scaffold1770 (80-132)||(349-401)


Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 4 - 526
Target Start/End: Original strand, 3798211 - 3798726
Alignment:
Q  4 acccttacacatttattatttcaatatattatttcttctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  3798211 acccttacacatttattatttcaatatattatttcttctataataaataggtaagggtattattgataaactcataattaatgttgcattaaaacttgaa 3798310  T
Q  104 agtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaagcagagggagtagtttttaaattagactcttgnnnnnnnnaccact 203  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||        ||||||    
T  3798311 agtgacaagtaaagtgaaacaaaactattatttaaaaacgacatatattatgaagcagagggagtagtttttaaattagactcttgttttttt-accact 3798409  T
Q  204 catttgagttttgaaactagaatcttcaaccnnnnnnncgacaaaagaatctccaacttattatcatttaattcaaatcagttgagctactcaacgatca 303  Q
    || ||||||||||||| ||||||||||||||       |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  3798410 cacttgagttttgaaattagaatcttcaacctttttttcgacaaaagaatcttcaatttattatcatttaattcaaatcagttgagctactcaacgatca 3798509  T
Q  304 aacccatcactatgactcatgtatcgtggccaacggactacaagctcactatatgaccccttacaagtcatttgaagcaattgggtcaagggactctttc 403  Q
    ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3798510 aactcatcactatcactcatgtatcgtggccaacggactacaagctcactatatgacccctttcaagtcatttgaagcaattgggtcaagggactctttc 3798609  T
Q  404 atctctacccattagtctctccaacgggccttcatgttact-cattgtagcacatgtttaacctaaacccactaaactcttatcaccccaaaccaaaact 502  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||       |||||||||||||||    
T  3798610 atctctacccattagtcccaccaacgggccttcatgttactccattttagcacatgtttaacctaaacccactaaact-------ccccaaaccaaaact 3798702  T
Q  503 agtaataccccacgatgacacctc 526  Q
    ||||||||||||||||||||||||    
T  3798703 agtaataccccacgatgacacctc 3798726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 368 - 526
Target Start/End: Original strand, 3793772 - 3793933
Alignment:
Q  368 aagtcatttgaagcaattgggtcaagggactctttcatctctacccattagtctctccaacgggccttcatgttact-cattgtagcac--atgtttaac 464  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||| |||| ||||  ||||||||||||||| |||| ||||||  || ||| ||    
T  3793772 aagtcatttgaagcaattgggtcatgtgactctttcatctctacccattactctcaccaattggccttcatgttactccattttagcacatatatttgac 3793871  T
Q  465 ctaaacccactaaactcttatcaccccaaaccaaaactagtaataccccacgatgacacctc 526  Q
    |||||||| || |||||||||||||||||   ||||||||||||||||||||||||||||||    
T  3793872 ctaaaccctctcaactcttatcaccccaagttaaaactagtaataccccacgatgacacctc 3793933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 244 - 353
Target Start/End: Original strand, 3806041 - 3806150
Alignment:
Q  244 acaaaagaatctccaacttattatcatttaattcaaatcagttgagctactcaacgatcaaacccatcactatgactcatgtatcgtggccaacggacta 343  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| || ||||||| |||||||||||||||    
T  3806041 acaaaagaatcttcaacttattatcatttaattcaaatcagttgaactactcaacgatcaaaccaatcactatcacccatgtattgtggccaacggacta 3806140  T
Q  344 caagctcact 353  Q
    ||| ||||||    
T  3806141 caaactcact 3806150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 263 - 375
Target Start/End: Original strand, 3793531 - 3793643
Alignment:
Q  263 attatcatttaattcaaatcagttgagctactcaacgatcaaacccatcactatgactcatgtatcgtggccaacggactacaagctcactatatgaccc 362  Q
    |||||| |||||||||||| ||||||||| ||||||| ||||||| |||||||| ||| ||||||| ||||||| |||||||||||||||||||| ||||    
T  3793531 attatcttttaattcaaattagttgagctgctcaacggtcaaacctatcactatcacttatgtatcatggccaatggactacaagctcactatataaccc 3793630  T
Q  363 cttacaagtcatt 375  Q
    || ||| ||||||    
T  3793631 ctcacacgtcatt 3793643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 366 - 521
Target Start/End: Original strand, 3806356 - 3806502
Alignment:
Q  366 acaagtcatttgaagcaattgggtcaagggactctttcatctctacccattagtctctccaacgggccttcatgttact-cattgtagcacatgtttaac 464  Q
    |||| ||||| ||||||||||||||||| |||||||||||||| || |||||||||| |||||||  | |||||||||| |||| |||||||| ||| ||    
T  3806356 acaaatcattcgaagcaattgggtcaagtgactctttcatctcgactcattagtctcaccaacggtacctcatgttactccattttagcacatatttcac 3806455  T
Q  465 ctaaacccactaaactcttatcaccccaaaccaaaactagtaataccccacgatgac 521  Q
    ||||||||          | |||||||||||||||||||||||||||||||||||||    
T  3806456 ctaaaccc----------tctcaccccaaaccaaaactagtaataccccacgatgac 3806502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 20398365 - 20398250
Alignment:
Q  42 tataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaaa 141  Q
    ||||||||||||||||| |||||||||| ||  | |||||||||||||||||||||||| |||||| |||||||||||||| |||| |||| | |||||     
T  20398365 tataataaataggtaagggtattattgacaatttaataattaatgttgcattaaaacttgaaagtggcaagtaaagtgaaacaaaattattttccaaaag 20398266  T
Q  142 cgacatatattgtgaa 157  Q
     ||||| |||||||||    
T  20398265 tgacatgtattgtgaa 20398250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 1814750 - 1814858
Alignment:
Q  49 aataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacata 148  Q
    ||||||||| | ||||||||| ||||  ||||| |||||||||||  || ||||||||||||||||||||||||||||| |||| |||||||  |||||     
T  1814750 aataggtaacaatattattgacaaaccaataatcaatgttgcattggaaattaaaagtgacaagtaaagtgaaataaaattattcttcaaaagtgacatg 1814849  T
Q  149 tattgtgaa 157  Q
    |||||||||    
T  1814850 tattgtgaa 1814858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 17942550 - 17942665
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt-ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaac 98  Q
    ||||||||||  |||||||||||||| | |||| ||| || |||| |||||||| ||||| |||||||||| |||   ||||||||||||||||| ||||    
T  17942550 aatacccttaaccatttattatttcattttatttttttctctctacaataaatatgtaagggtattattgacaaaacaataattaatgttgcattgaaac 17942649  T
Q  99 ttaaaagtgacaagta 114  Q
    || |||||||||||||    
T  17942650 ttgaaagtgacaagta 17942665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 26860873 - 26861029
Alignment:
Q  4 acccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaactt 100  Q
    |||||||  |||||||||||| | | ||||||||||   ||| ||||||||||||||  |||||||||| |||   ||||| ||||||| ||| |||| |    
T  26860873 acccttaaccatttattattttattctattatttctctctctgtaataaataggtaaaggtattattgacaaatcaataatcaatgttgtattgaaacat 26860972  T
Q  101 aaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
     ||| ||||||||||||||||| |||  |||| | |||||| ||||| |||||||||    
T  26860973 gaaaatgacaagtaaagtgaaacaaacttattctccaaaaatgacatgtattgtgaa 26861029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 8235773 - 8235865
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||| ||||| |||||||||||||    ||||||||| ||||||| |||||| |||||||||||||  |||||| |||| ||||    
T  8235773 tctacaataaatatgtaagggtattattgataagacaataattaatattgcattgaaacttgaaagtgacaagtattgtgaaacaaaattatt 8235865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 13757313 - 13757447
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||  || ||||||||||| | |||| |||||   |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| |||    
T  13757313 aatacccttaatcaattattatttcattttattttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 13757412  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||| |||||||||||||  |||||| |||| ||||    
T  13757413 cttgaaagtgacaagtattgtgaaacaaaattatt 13757447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 14287093 - 14287188
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcatt 93  Q
    ||||||||||| | |||||||||||| | |||||||| |   |||| ||||| |||||||||||||||| ||||||   ||||||| |||||||||    
T  14287093 aatacccttacccctttattatttcattttattatttatctctctacaataactaggtaagagtattatggataaatcaataattagtgttgcatt 14287188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 24120645 - 24120714
Alignment:
Q  77 ataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgaca 146  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||||| | || | || | |||||||||||    
T  24120645 ataattagtgttgcattaaaactaaaaagtgacaagtaatgtgaaacacaaattttctccaaaaacgaca 24120714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 1605684 - 1605818
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||  |||||||||||||| | |||| |||||   |||| |||||||| | ||| |||||||||| ||    ||||||||||||| ||| |||    
T  1605684 aatacccttaatcatttattatttcattttattttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgtattgaaa 1605783  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
     || |||||||||||||  |||||| |||| ||||    
T  1605784 tttgaaagtgacaagtattgtgaaacaaaattatt 1605818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 15064864 - 15064750
Alignment:
Q  3 tacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaact 99  Q
    ||||||||  |||||||||||| | |||||| |||||   |||| |||||||| | ||| |||||||||| ||    ||||||||||||| ||| |||||    
T  15064864 tacccttaaccatttattatttgattatattttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgtattgaaact 15064765  T
Q  100 taaaagtgacaagta 114  Q
    | |||||||||||||    
T  15064764 tgaaagtgacaagta 15064750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 8626587 - 8626722
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  8626587 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 8626686  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||| ||||||||  |||||| |||| ||||    
T  8626687 acttgaaagggacaagtattgtgaaacaaaattatt 8626722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 847901 - 847829
Alignment:
Q  44 taataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaa 116  Q
    |||||||||  ||||||||||||||| |||   ||||||||||||||||| ||  || ||| |||||||||||    
T  847901 taataaatatttaagagtattattgacaaagcaataattaatgttgcattgaactttgaaaatgacaagtaaa 847829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 4129614 - 4129666
Alignment:
Q  80 attaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||||||||||||| |||||| |||||||||||||  |||||| |||| ||||    
T  4129614 attaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattatt 4129666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 24064329 - 24064485
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||| |||||||||||| | | ||||||||||   |||| |||||||||||||   ||||||||||||||  |||||||||||| ||||||||    
T  24064329 aatacccttacccatttattattttattctattatttctctctctacaataaataggtaa---tattattgataaaccaataattaatgttacattaaaa 24064425  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    ||| ||||||||| |||||||||||||||| |||| | |||||||||||| |||||||||    
T  24064426 cttgaaagtgacatgtaaagtgaaataaaattattctccaaaaacgacatgtattgtgaa 24064485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 18356039 - 18355867
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||| ||||||| |||||| | ||||||||||   |||| |||||||| ||||| ||||||||||||||   ||||||||||||||||| |||    
T  18356039 aatacccttactcatttatcatttcattctattatttctctctctacaataaataagtaagggtattattgataaatcaataattaatgttgcattgaaa 18355940  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaagcagagggagtag 170  Q
    ||| ||||||||||||||||||||| |||| |||| |||||||  ||||  ||||||||| | ||||||||||    
T  18355939 cttgaaagtgacaagtaaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggagggagtag 18355867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 48436345 - 48436489
Alignment:
Q  14 atttattatttcaatatattatttct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaag 112  Q
    ||||||||||||| |||||||||||| |||| ||||||||  |||| |||||||||| || || ||||||||||||||||| |||||| |||||||||||    
T  48436345 atttattatttcattatattatttctctctacaataaataattaagtgtattattgacaagctaataattaatgttgcattgaaacttgaaagtgacaag 48436444  T
Q  113 taaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    ||| |||||| |||| |||| | |||||  |||| ||||||||||    
T  48436445 taatgtgaaacaaaattattctccaaaagtgacaaatattgtgaa 48436489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 19897099 - 19896942
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttcttct-ataataaataggtaagagtattattgataaactcataattaatgttgcattaaaact 99  Q
    ||||||||||| | |||||||||||| | ||||||||||| | ||||||||||| ||||  ||||||||||||||  ||||||||||||| |||||||||    
T  19897099 aatacccttactcttttattatttcattctattatttctttttataataaatagataaggatattattgataaaccaataattaatgttgtattaaaact 19897000  T
Q  100 taaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    | ||||  | |||| |||| ||| |||| |||| ||||||| | |||| ||| |||||    
T  19896999 tgaaagaaagaagtgaagtaaaacaaaattatttttcaaaagcaacatgtatggtgaa 19896942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 54086659 - 54086817
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||| |||| ||||||||| | |||||||| |   ||||||||| ||||||||| ||||||||||||||   ||||||||||||| ||| |||    
T  54086659 aatacccttactcatt-attatttcattctattatttttctctctataatacataggtaagggtattattgataaatcaataattaatgttgtattgaaa 54086757  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    ||| |||||||||| |||| ||||| |||| |||| | |||||  ||||  |||||||||    
T  54086758 cttgaaagtgacaaataaaatgaaacaaaagtattctccaaaatggacaagtattgtgaa 54086817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 6901669 - 6901825
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||| |||||||||||||| | | ||||||||   || | ||||||  | ||||  |||||||||||||   || |||||||||||||| |||    
T  6901669 aatacccttactcatttattatttcattctgttatttctctctcaacaataaa--gttaaggatattattgataaatcaatgattaatgttgcattgaaa 6901766  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    ||||||||||||||||||||||||| |||| |||| | |||||  |||| ||||||||||    
T  6901767 cttaaaagtgacaagtaaagtgaaacaaaattattctccaaaatggaca-atattgtgaa 6901825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 40228361 - 40228223
Alignment:
Q  13 catttattatttcaatatattatttct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaa 111  Q
    |||||||||||||  |||||||||||| |||| |||||||| |||||||| ||||| | || |  |||||||||||||||||       |||||||||||    
T  40228361 catttattatttcgttatattatttctctctacaataaataagtaagagttttattaacaagccaataattaatgttgcatt-------aaaagtgacaa 40228269  T
Q  112 gtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    || | ||||||||||| | || |||||||| |||| ||||||||||    
T  40228268 gtgatgtgaaataaaattgttcttcaaaaatgacaaatattgtgaa 40228223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 3383181 - 3383316
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    |||||||||| ||||||||||||||| | |||| |||   || |||| |||||||| | |||||||||||||| ||    ||||||||||||||||| ||    
T  3383181 aatacccttaaacatttattatttcattttatttttttctctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaa 3383280  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||||||||  |||||| |||| ||||    
T  3383281 acttgaaagtgacaagtattgtgaaacaaaattatt 3383316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 53559777 - 53559648
Alignment:
Q  6 ccttacacatttattatttcaatatattatttctt---ctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaa 102  Q
    |||||| | |||||||||||| | |||||||| ||   ||| |||||||| |||| ||||||||| |||||   || |||||||||||||| |||||| |    
T  53559777 ccttacccgtttattatttcattttattatttatttctctacaataaataagtaacagtattattaataaatcaatgattaatgttgcattgaaacttga 53559678  T
Q  103 aagtgacaagtaaagtgaaataaaactatt 132  Q
     ||||||||||||| ||||| |||| ||||    
T  53559677 gagtgacaagtaaattgaaacaaaattatt 53559648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 37293559 - 37293643
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaa 127  Q
    |||| |||||||||||||| ||| |||||||||| |||  |||||||||||||| |||||| |||| |||||||||| ||||| ||||    
T  37293559 tctacaataaataggtaagggtaatattgataaa-tca--attaatgttgcattgaaacttgaaagggacaagtaaaatgaaacaaaa 37293643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 23088103 - 23087954
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  23088103 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 23088004  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgaca 146  Q
    |||| |||||||||||||  |||||| |||| |||| || |||| |||||    
T  23088003 acttgaaagtgacaagtattgtgaaacaaaattattctttaaaatcgaca 23087954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 43750254 - 43750358
Alignment:
Q  13 catttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgac 109  Q
    |||||||||||||| | |||| |||||   || | |||||||| | |||||||||||||| ||    ||||||||||||||||| |||||| ||||||||    
T  43750254 catttattatttcattctattttttctctctcaacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaacttgaaagtgac 43750353  T
Q  110 aagta 114  Q
    |||||    
T  43750354 aagta 43750358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 46188886 - 46188970
Alignment:
Q  15 tttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    |||||||||||| ||||||||||||   |||| |||||||| | |||| ||||||||| ||||  |||||||||||| |||||||    
T  46188886 tttattatttcattatattatttctctctctacaataaataagcaagaatattattgacaaaccaataattaatgttacattaaa 46188970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 19241760 - 19241723
Alignment:
Q  77 ataattaatgttgcattaaaacttaaaagtgacaagta 114  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  19241760 ataattaatgttgcattgaaacttaaaagtgacaagta 19241723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 46694282 - 46694147
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  46694282 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 46694183  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||||||||  |||||| |||| ||||    
T  46694182 acttgaaagtgacaagtattgtgaaacaaaattatt 46694147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 26783661 - 26783709
Alignment:
Q  84 atgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||||||||| |||||| ||||||||||||||||||||| |||| ||||    
T  26783661 atgttgcattgaaacttgaaagtgacaagtaaagtgaaacaaaattatt 26783709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 48820508 - 48820580
Alignment:
Q  60 gtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||||||||| |||   ||||||||||||||||| |||||| |||||||||||||  |||||| |||| ||||    
T  48820508 gtattattgacaaaacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattatt 48820580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 13364948 - 13365065
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  13364948 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 13365047  T
Q  97 acttaaaagtgacaagta 114  Q
    |||| |||||||||||||    
T  13365048 acttgaaagtgacaagta 13365065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 29375317 - 29375372
Alignment:
Q  77 ataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||||||||||||||||| |||||| |||||||||||||  |||||| |||| ||||    
T  29375317 ataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattatt 29375372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 31873955 - 31873900
Alignment:
Q  77 ataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||||||||||||||||| |||||| |||| ||||||||  ||||||||||| ||||    
T  31873955 ataattaatgttgcattgaaacttgaaagggacaagtattgtgaaataaaattatt 31873900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 198960 - 199095
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| |||   ||||||||||||||||| ||    
T  198960 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaaaacaataattaatgttgcattgaa 199059  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| ||| |||||| ||  |||||| |||| ||||    
T  199060 acttgaaaatgacaaatattgtgaaacaaaattatt 199095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 13703397 - 13703434
Alignment:
Q  77 ataattaatgttgcattaaaacttaaaagtgacaagta 114  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  13703397 ataattaatgttgcattgaaacttgaaagtgacaagta 13703434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 1455270 - 1455202
Alignment:
Q  50 ataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagt 118  Q
    |||||||||  | ||||||| ||||  ||||||||||||||||| ||| |  |||||||||||||||||    
T  1455270 ataggtaaggatgttattgacaaaccaataattaatgttgcattgaaattggaaagtgacaagtaaagt 1455202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 36881428 - 36881520
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| |||||| |||| ||||||||  |||||| |||| ||||    
T  36881428 tctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattatt 36881520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 734510 - 734338
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||| |||||||||||||| | |||||||| |   ||||||||| |||||||||||||||||||||||||  ||||||||||||| ||| |||    
T  734510 aatacccttactcatttattatttcattctattatttttctctctataatatataggtaagagtattattgataaaccaataattaatgttgtattgaaa 734411  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaagcagagggagtag 170  Q
    ||| ||||||||||||||||||||| |||| |||| | |||||  ||||  ||||||||| | | ||||||||    
T  734410 cttgaaagtgacaagtaaagtgaaacaaaattattctccaaaatggacaagtattgtgaaacggtgggagtag 734338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 39070988 - 39071122
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||| |||||||||||||| | ||||||||||   |||| |||||||||||||| | |||||||||||||  ||||||||||||||||| | |    
T  39070988 aatacccttactcatttattatttcattctattatttctctctctacaataaataggtaagtggattattgataaaccaataattaatgttgcattgata 39071087  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||||||||||||||||||||||||| |||| ||||    
T  39071088 cttaaaagtgacaagtaaagtgaaacaaaattatt 39071122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 11319664 - 11319796
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaact 99  Q
    ||||||||||| |||||||||||||| | |||||||||| |||| ||||||||||||||||||||||| ||||||  ||||||||| ||||||||||||     
T  11319664 aatacccttactcatttattatttcattctattatttctctctacaataaataggtaagagtattattaataaaccaataattaatattgcattaaaacc 11319763  T
Q  100 taaaagtgacaagtaaagtgaaataaaactatt 132  Q
    | ||||||| || |||||||||| |||| ||||    
T  11319764 tgaaagtgataaataaagtgaaacaaaattatt 11319796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 16054229 - 16054376
Alignment:
Q  13 catttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgac 109  Q
    |||||||||||| | | ||||||||||   |||| ||||||||| |||| |||||||||| ||||| ||||||||||||||||| |||||| ||||||||    
T  16054229 catttattattttattctattatttctctctctacaataaatagataagggtattattgacaaactaataattaatgttgcattgaaacttgaaagtgac 16054328  T
Q  110 aagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    ||  ||||||||  |||| |||| | ||||| |||||| |||| ||||    
T  16054329 aaccaaagtgaaccaaaattattctccaaaagcgacatgtattttgaa 16054376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 11795403 - 11795320
Alignment:
Q  49 aataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| |||||| ||||||| || |||||||||| |||| ||||    
T  11795403 aataggtaagagtattattgataaacctataattaatgttgcattgaaacttgaaagtgataaataaagtgaaacaaaattatt 11795320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 1056778 - 1056625
Alignment:
Q  15 tttattatttcaatatattatttct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagt 113  Q
    ||||||||||||  || |||||||| |||| ||||||||  ||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||  |||    
T  1056778 tttattatttcatcatgttatttctctctacaataaataaataagagtattattgacaaactaataattaatgttgcattgaaacttgaaagtga-tagt 1056680  T
Q  114 aaagtgaaataaaactattattcaaaaacgacatatattgtgaagcagagggagta 169  Q
     || |||||||||| |||| | |||||  ||||  ||||||||| | |||||||||    
T  1056679 -aattgaaataaaattattctccaaaagtgacaagtattgtgaaacggagggagta 1056625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 21638889 - 21638996
Alignment:
Q  13 catttattatttcaatatattatttct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaa 111  Q
    |||||||||||||| | |||||||||| || | |||| ||||||||||| |||||||| ||||  ||| ||||||||||||| ||||||||| |||||||    
T  21638889 catttattatttcactctattatttctctccacaatatataggtaagagaattattgacaaaccaatatttaatgttgcatttaaacttaaatgtgacaa 21638988  T
Q  112 gtaaagtg 119  Q
    || |||||    
T  21638989 gtcaagtg 21638996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 30403086 - 30402999
Alignment:
Q  45 aataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||||||| | |||| |||||||||| ||||  ||||||||| ||| ||| |||||||||||||||||||||| |||||||||| ||||    
T  30403086 aataaatggataagggtattattgacaaaccaataattaattttgtattgaaacttaaaagtgacaagtaaaatgaaataaaattatt 30402999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 25683400 - 25683285
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||  |||||||||||| | | |||| |||||   |||| |||||||| ||||| |||||||||| |||   ||||||||||||||||| |||    
T  25683400 aatacccttaaccatttattattttattctattttttctctctctacaataaatatgtaagggtattattgacaaaacaataattaatgttgcattgaaa 25683301  T
Q  98 cttaaaagtgacaagt 113  Q
    ||| ||||||||||||    
T  25683300 cttgaaagtgacaagt 25683285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 15629284 - 15629391
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaa 139  Q
    |||| ||||||||||||||  |||  |||||||| | |||||||||| |||||| ||| |||||| | ||||||||||||||| |||| ||||||  |||    
T  15629284 tctacaataaataggtaagtatatcgttgataaattaataattaatgctgcattgaaatttaaaaataacaagtaaagtgaaacaaaattattataaaaa 15629383  T
Q  140 aacgacat 147  Q
    || |||||    
T  15629384 aatgacat 15629391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 16983442 - 16983505
Alignment:
Q  77 ataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaa 140  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||| |||| |||| |||||||    
T  16983442 ataattaatgttgcattgaaacttaaaagtgacaagtattgtgaaacaaaattattcttcaaaa 16983505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 11797663 - 11797772
Alignment:
Q  14 atttattatttcaatatattatttct-----tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtga 108  Q
    ||||||||||||| ||||||||||||     |||| |||||||| | ||| |||| ||||| ||||| ||||||||||||| ||| ||| || ||| |||    
T  11797663 atttattatttcattatattatttctctttatctacaataaataagcaagggtatcattgacaaactaataattaatgttgtattgaaatttgaaaatga 11797762  T
Q  109 caagtaaagt 118  Q
    ||||||||||    
T  11797763 caagtaaagt 11797772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 26168058 - 26168173
Alignment:
Q  41 ctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaa 140  Q
    ||||| |||||||| ||| |||||||| | ||||  || |||||| ||||||| |||||| |||||||||| |||||||||| |||| |||| |  ||||    
T  26168058 ctatagtaaataggcaag-gtattattaacaaacaaatcattaatcttgcattgaaacttgaaagtgacaattaaagtgaaacaaaattattctctaaaa 26168156  T
Q  141 acgacatatattgtgaa 157  Q
    ||||||| ||| |||||    
T  26168157 acgacatgtatcgtgaa 26168173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 37900715 - 37900652
Alignment:
Q  77 ataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaa 140  Q
    ||||||||||||||||| |||||| |||||||||||||  |||||| |||| |||| |||||||    
T  37900715 ataattaatgttgcattgaaacttgaaagtgacaagtatcgtgaaacaaaattattcttcaaaa 37900652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 40886782 - 40886647
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  40886782 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 40886683  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||||||||  |||||| |||| ||||    
T  40886682 acttgaaagtgacaagtattgtgaaacaaaattatt 40886647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 169
Target Start/End: Complemental strand, 10285150 - 10285058
Alignment:
Q  77 ataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaagcagagggagta 169  Q
    ||||||||||||||||| |||||| |||||||||||||  |||||| |||| |||| || ||||  ||||  |||| |||| | |||||||||    
T  10285150 ataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctttaaaatagacaagtattatgaaacggagggagta 10285058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 9747237 - 9747178
Alignment:
Q  45 aataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaa 104  Q
    |||| ||||||||| |||||||||| ||| | ||| ||||||||||||||||| ||||||    
T  9747237 aatatataggtaagtgtattattgacaaaataatagttaatgttgcattaaaatttaaaa 9747178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 12807025 - 12806890
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttc----ttctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| ||||     |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  12807025 aatacccttaatcatttattatttcattttattttttcctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 12806926  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||| ||||||||  |||||| |||| ||||    
T  12806925 acttgaaagagacaagtattgtgaaacaaaattatt 12806890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 1056442 - 1056397
Alignment:
Q  13 catttattatttcaatatattatttct-tctataataaataggtaa 57  Q
    |||||||||||||| |||||||||||| |||| |||||||||||||    
T  1056442 catttattatttcattatattatttctctctacaataaataggtaa 1056397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 30720621 - 30720529
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||| | ||| |||||||||| ||    |||| |||||||||||| |||||| |||||||||||||  |||||| |||| ||||    
T  30720621 tctacaataaatatgcaagggtattattgacaagacaataactaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattatt 30720529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 36561228 - 36561136
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||| | ||| |||||||||| ||    ||| ||||||||||||| |||||| |||||||||||||  |||||| |||| ||||    
T  36561228 tctacaataaatatgcaagggtattattgacaagacaatacttaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattatt 36561136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 6129120 - 6128961
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||  |||||||||||||| |  |||||||||   |||| ||||||||| |||| |||||||||||||||  ||||||||||||||||| |||    
T  6129120 aatacccttaatcatttattatttcattccattatttctctctctacaataaatagataagggtattattgataaaccaataattaatgttgcattgaaa 6129021  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    ||| ||||||||||||||| ||||| |||| |||| ||||||| |||||| |||||||||    
T  6129020 cttgaaagtgacaagtaaaatgaaacaaaattattcttcaaaagcgacatgtattgtgaa 6128961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 19692828 - 19692962
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    |||| |||||| |||||||||||||| | ||||||||||   |||| |||||||| ||||| || ||||||||||||  ||||||||||||||||| |||    
T  19692828 aatatccttactcatttattatttcattctattatttctctctctacaataaataagtaagggtgttattgataaaccaataattaatgttgcattgaaa 19692927  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||| ||||||||||||||||||||| |||| ||||    
T  19692928 cttgaaagtgacaagtaaagtgaaacaaaattatt 19692962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 19703413 - 19703547
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    |||| |||||| |||||||||||||| | ||||||||||   |||| |||||||| ||||| || ||||||||||||  ||||||||||||||||| |||    
T  19703413 aatatccttactcatttattatttcattctattatttctctctctacaataaataagtaagggtgttattgataaaccaataattaatgttgcattgaaa 19703512  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||| ||||||||||||||||||||| |||| ||||    
T  19703513 cttgaaagtgacaagtaaagtgaaacaaaattatt 19703547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 48652379 - 48652489
Alignment:
Q  47 taaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgaca 146  Q
    |||||||||||| |||||||| |||||   ||||||||||| |||||||||||| ||||| ||||||||||||||| |||| |||| | ||||| |||||    
T  48652379 taaataggtaagggtattattaataaatcaataattaatgtcgcattaaaactttaaagtaacaagtaaagtgaaacaaaattattctccaaaagcgaca 48652478  T
Q  147 tatattgtgaa 157  Q
    |||||||||||    
T  48652479 tatattgtgaa 48652489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 32543585 - 32543756
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttctt---ctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||  |||||||||||||| | |||||||||||   ||| ||||||||| |||| |||||| ||| ||||  ||||||||||| |||||||||    
T  32543585 aatacccttaatcatttattatttcattttattatttctttttctacaataaatagataagggtattaatgacaaaccaataattaatgtcgcattaaaa 32543684  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaagcagagggagta 169  Q
    ||| ||||| ||||||||| ||||| |||| |||| |  |||| |||||  ||||||||| |||| ||||||    
T  32543685 cttgaaagtaacaagtaaaatgaaacaaaattattctctaaaagcgacaagtattgtgaaacagaaggagta 32543756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 18507423 - 18507308
Alignment:
Q  14 atttattatttcaatatattatt-tct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaa 111  Q
    ||||||||||||| ||||||||| ||| ||||||||||||| |||||| ||||||||| ||    ||||||||||||||||| |||||| ||||||||||    
T  18507423 atttattatttcattatattattctctctctataataaataagtaagaatattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaa 18507324  T
Q  112 gtaaagtgaaataaaa 127  Q
    | || |||||| ||||    
T  18507323 gaaatgtgaaacaaaa 18507308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 22321439 - 22321305
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||  |||||||||||||| | |||| |||||   |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| |||    
T  22321439 aatacccttaatcatttattatttcattttattttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 22321340  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||| |||||||||||||  |||||| |||| ||||    
T  22321339 cttgaaagtgacaagtattgtgaaacaaaattatt 22321305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 40122657 - 40122524
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt-ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaac 98  Q
    ||||||||||  |||||||||||||| | |||| ||| || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||||    
T  40122657 aatacccttaaccatttattatttcattttatttttttctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaac 40122558  T
Q  99 ttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    || |||||||||||||  |||||| |||| ||||    
T  40122557 ttgaaagtgacaagtattgtgaaacaaaattatt 40122524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 12071666 - 12071800
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||  |||||||||||||| | |||| |||||   |||| |||||||| | ||| |||||||||| ||    | ||||||||||||||| |||    
T  12071666 aatacccttaatcatttattatttcattttattttttctctctctacaataaatatgcaagggtattattgacaagacaagaattaatgttgcattgaaa 12071765  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||| |||||||||||||  |||||| |||| ||||    
T  12071766 cttgaaagtgacaagtattgtgaaacaaaattatt 12071800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 21310530 - 21310661
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaact 99  Q
    ||||||||||  |||||||||||||| | | || ||||| |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| |||||    
T  21310530 aatacccttaatcatttattatttcattttttt-tttctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaact 21310628  T
Q  100 taaaagtgacaagtaaagtgaaataaaactatt 132  Q
    | |||||||||||||  |||||| |||| ||||    
T  21310629 tgaaagtgacaagtattgtgaaacaaaattatt 21310661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 50839123 - 50839043
Alignment:
Q  77 ataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    ||||||||||||||||| |||||| ||| |||||||||| |||||| |||| |||| | ||||| |||||  |||||||||    
T  50839123 ataattaatgttgcattgaaacttgaaaatgacaagtaatgtgaaacaaaattattctccaaaagcgacaagtattgtgaa 50839043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 26676704 - 26676649
Alignment:
Q  45 aataaataggtaagagtattattgataaactcataattaatgttgcattaaaactt 100  Q
    ||||||||| |||||||||||||||||||   ||||||| ||||||||||||||||    
T  26676704 aataaatagataagagtattattgataaatcaataattattgttgcattaaaactt 26676649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 31892417 - 31892454
Alignment:
Q  77 ataattaatgttgcattaaaacttaaaagtgacaagta 114  Q
    |||||||||||| |||||||||||||||||||||||||    
T  31892417 ataattaatgttacattaaaacttaaaagtgacaagta 31892454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 50767969 - 50768102
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt-ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaac 98  Q
    ||||||||||   ||||||||||||| | |||| ||| || |||| |||||||| ||||| |||||||||| ||    ||||||||||||||||| ||||    
T  50767969 aatacccttaataatttattatttcattttatttttttctctctacaataaatatgtaagggtattattgacaagacaataattaatgttgcattgaaac 50768068  T
Q  99 ttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    || |||||||||| ||  |||||| |||| ||||    
T  50768069 ttgaaagtgacaaatattgtgaaacaaaattatt 50768102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 20714508 - 20714426
Alignment:
Q  13 catttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcat 92  Q
    |||||||||||||| |||||||||| |   |||| ||||||||  |||| |||||||||| ||||  ||||||||||||||||    
T  20714508 catttattatttcattatattatttatctttctaaaataaataaataagggtattattgacaaaccaataattaatgttgcat 20714426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 51777771 - 51777838
Alignment:
Q  59 agtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaa 127  Q
    ||||||||||| ||||  ||||||||||||||| | || ||||||||||||||||||||| ||| ||||    
T  51777771 agtattattgacaaaccaataattaatgttgcacttaa-cttaaaagtgacaagtaaagtaaaacaaaa 51777838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 25704756 - 25704891
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct----tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| ||| |    |||| |||||||| | ||| |||||||||| ||    ||||||||||||||| | ||    
T  25704756 aatacccttaatcatttattatttcattttatttttttttctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcactgaa 25704855  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||||||||  |||||| |||| ||||    
T  25704856 acttgaaagtgacaagtattgtgaaacaaaattatt 25704891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 24706419 - 24706284
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  24706419 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 24706320  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||| ||||||||  |||||| |||| ||||    
T  24706319 acttgaaagggacaagtattgtgaaacaaaattatt 24706284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 14261192 - 14261284
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| |||||| |||| ||||||||  |||||| |||| ||||    
T  14261192 tctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattatt 14261284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 20249185 - 20249051
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||  |||||||||||| | | |||| |||||   |||| |||||||| ||||| |||||||||| ||    ||||||||| ||||||| |||    
T  20249185 aatacccttaaccatttattattttattctattttttctctctctacaataaatatgtaagggtattattgacaagacaataattaatattgcattgaaa 20249086  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||| |||| |||| |||  |||||| |||| ||||    
T  20249085 cttgaaagagacaggtattgtgaaacaaaattatt 20249051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 51064925 - 51064754
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||| | |||||||||||| ||||||||||||   |||| |||||||||||||| |||||||||||||||| |||||||| |||||||| |||    
T  51064925 aatacccttactcgtttattatttcattatattatttctctctctacaataaataggtaagggtattattgataaactaataattaacgttgcattgaaa 51064826  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaagcagagggagta 169  Q
    ||| |||||||||| |||||||||| |||| |||| |  ||||  ||||  ||||||||| |||| ||||||    
T  51064825 cttgaaagtgacaaataaagtgaaacaaaattattctctaaaatggacaagtattgtgaaacagacggagta 51064754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 34458895 - 34458736
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    |||| ||||||  ||||||||||||| | ||||||||||   |||||||| |||| ||||| ||||||| | |||||  ||||||||||||||||  |||    
T  34458895 aataaccttactaatttattatttcattctattatttctctctctataatgaatatgtaagggtattatcggtaaaccaataattaatgttgcatcgaaa 34458796  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    ||| ||||||||||||||||||||| |||| |||| | ||||| ||||||||||||||||    
T  34458795 cttgaaagtgacaagtaaagtgaaacaaaattattctccaaaagcgacatatattgtgaa 34458736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 40261414 - 40261297
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaa 139  Q
    |||| |||||||| ||||| |||||||||| ||||  ||||||||||||||||| |||||| |||||||||||||| |||||| |||| |||| ||||||    
T  40261414 tctacaataaatatgtaagggtattattgacaaaccaataattaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaattattcttcaaa 40261315  T
Q  140 aacgacatatattgtgaa 157  Q
    | ||||||||||||||||    
T  40261314 agcgacatatattgtgaa 40261297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 31003958 - 31003785
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||  |||||||||||| | | ||||||||||   |||| |||||||||||||| ||||||| || ||||  | ||||||||||||||| |||    
T  31003958 aatacccttaaccatttattatttaattctattatttctctctctacaataaataggtaagggtattatggacaaaccaacaattaatgttgcattgaaa 31003859  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaagcagagggagtagt 171  Q
    ||| |||||| ||||||| |||||| |||| |||| | ||||| ||| |  ||||||||| |||||||||||||    
T  31003858 cttgaaagtggcaagtaatgtgaaacaaaattattctccaaaagcgataagtattgtgaaacagagggagtagt 31003785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 156
Target Start/End: Original strand, 24876714 - 24876825
Alignment:
Q  45 aataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacga 144  Q
    |||||||| |||||||||||||||| ||||  ||||||||||| ||||| | |||| ||||||||||||||| ||||| |||| |||| | |||||||||    
T  24876714 aataaataagtaagagtattattgacaaaccaataattaatgtcgcattgacacttgaaagtgacaagtaaaatgaaacaaaattattctccaaaaacga 24876813  T
Q  145 catatattgtga 156  Q
    ||  ||||||||    
T  24876814 caagtattgtga 24876825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 23526345 - 23526516
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||  |||||||||||||| | |||| |||||   |||| |||||||| ||||| |||||||||| ||    ||||||||||||||||| |||    
T  23526345 aatacccttaaccatttattatttcattctattttttctatctctacaataaatatgtaagggtattattgacaagacaataattaatgttgcattgaaa 23526444  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaagcagagggagta 169  Q
    ||| |||||||||||||  |||||| |||| |||| |||||||  ||||  |||| |||| | |||||||||    
T  23526445 cttgaaagtgacaagtattgtgaaacaaaattattcttcaaaatggacaagtattatgaaacggagggagta 23526516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 1838001 - 1837881
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct-----tctataataaataggtaagagtattattgataaactcataattaatgttgcattaa 95  Q
    ||||||||||| |||||||||||| |  |||||||||||     | || ||||||||| | || ||||||||||||||   ||||||||||||||||| |    
T  1838001 aatacccttacccatttattattttatcatattatttctctctctttacaataaatagattagggtattattgataaatcaataattaatgttgcattga 1837902  T
Q  96 aacttaaaagtgacaagtaaa 116  Q
    |||||||||||||||||||||    
T  1837901 aacttaaaagtgacaagtaaa 1837881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 27143171 - 27143014
Alignment:
Q  13 catttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgac 109  Q
    |||||||||||||| | ||||||||||   |||| | |||||||||||| |||||||||| ||||  ||||||||||||| ||| ||||||   ||||||    
T  27143171 catttattatttcattctattatttctctctctacagtaaataggtaagggtattattgacaaaccaataattaatgttgtattgaaactt--gagtgac 27143074  T
Q  110 aagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaagcagagggagta 169  Q
    |||||| |||||| |||| |||| | ||||| |||||  |||| |||||| || ||||||    
T  27143073 aagtaatgtgaaacaaaattattctccaaaagcgacaattattatgaagcggatggagta 27143014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 40052604 - 40052501
Alignment:
Q  30 tattatttct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaac 128  Q
    |||||||||| ||||||||||||| | ||   ||||||||| ||||  ||||||||||||||||| |||||| |||||||||||||| |||||| ||||     
T  40052604 tattatttctctctataataaataagcaacgatattattgacaaaccaataattaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaat 40052505  T
Q  129 tatt 132  Q
    ||||    
T  40052504 tatt 40052501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 31061614 - 31061514
Alignment:
Q  13 catttattatttcaatatattatttcttctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaag 112  Q
    |||||||||||||| |||||||||||| ||| | |||||| || || |||||||||  ||||  ||||||||||||||||| |||||| | |||||||||    
T  31061614 catttattatttcattatattatttct-ctacagtaaatatgtgagggtattattgtcaaaccaataattaatgttgcattgaaacttgagagtgacaag 31061516  T
Q  113 ta 114  Q
    ||    
T  31061515 ta 31061514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 14925612 - 14925727
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaa 139  Q
    |||| ||||||||||||||||||||||||| ||||  |||  ||| |||||||| |||||| |||  |||||||||||||||| |||| |||  |  |||    
T  14925612 tctacaataaataggtaagagtattattgacaaaccaata--taaggttgcattgaaacttgaaaacgacaagtaaagtgaaacaaaattatgctctaaa 14925709  T
Q  140 aacgacatatattgtgaa 157  Q
    |||||||  |||||||||    
T  14925710 aacgacaagtattgtgaa 14925727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 3657222 - 3657282
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaactt 100  Q
    |||| ||||||||||||| ||||||||||| ||||  ||||||||||||||||| ||||||    
T  3657222 tctacaataaataggtaaaagtattattgacaaaccaataattaatgttgcattgaaactt 3657282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 46771786 - 46771886
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaa 139  Q
    |||| |||||||| |||||||||||||||| ||    |||||||||||| |||| |||||| ||||||| |||||  |||||| |||| |||| ||||||    
T  46771786 tctacaataaatatgtaagagtattattgacaagaaaataattaatgttacattgaaacttgaaagtgataagtattgtgaaacaaaattattcttcaaa 46771885  T
Q  140 a 140  Q
    |    
T  46771886 a 46771886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 284481 - 284555
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagta 114  Q
    |||| |||||||| | ||| |||||||||||||    ||||||||||||||||| |||||| |||||||||||||    
T  284481 tctacaataaatatgcaagggtattattgataagtcaataattaatgttgcattgaaacttgaaagtgacaagta 284555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 14350581 - 14350528
Alignment:
Q  62 attattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaa 115  Q
    |||||||| |||||  |||||||||||||||| |||||| ||||||||||||||    
T  14350581 attattgacaaactggtaattaatgttgcattgaaactttaaagtgacaagtaa 14350528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 40783829 - 40783694
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  40783829 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 40783730  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||||||||  |||||| |||| ||||    
T  40783729 acttgaaagtgacaagtattgtgaaacaaaattatt 40783694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 321774 - 321866
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| |||||| |||||||||||||  |||||| |||| ||||    
T  321774 tctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaaatatt 321866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 18396812 - 18396913
Alignment:
Q  13 catttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactca-taattaatgttgcattaaaacttaaaagtga 108  Q
    |||| ||||||||| | ||||||||||   |||| |||||||| ||||| | |||||||| ||| ||| |||||||||||||||| |||||| |||||||    
T  18396812 cattcattatttcattctattatttctctctctacaataaataagtaagggaattattga-aaagtcaataattaatgttgcattgaaacttgaaagtga 18396910  T
Q  109 caa 111  Q
    |||    
T  18396911 caa 18396913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 23166980 - 23166888
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| ||||||||| ||||||||||||||| |||   ||||||||||||| ||| |||||| ||||| | || ||| |||||| |||| ||||    
T  23166980 tctaaaataaatagataagagtattattgacaaatcaataattaatgttgtattgaaacttgaaagtaataaataatgtgaaacaaaattatt 23166888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 25929251 - 25929363
Alignment:
Q  45 aataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacga 144  Q
    ||||||||| |||| ||||||||||||||   ||| |||||||||| || |||||| |||| | ||||| || ||||| |||| |||| || |||| |||    
T  25929251 aataaatagataagggtattattgataaatcaatatttaatgttgcgttgaaacttgaaaggggcaagtgaaatgaaacaaaattattctttaaaagcga 25929350  T
Q  145 catatattgtgaa 157  Q
    ||  |||||||||    
T  25929351 caagtattgtgaa 25929363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 27211047 - 27210967
Alignment:
Q  77 ataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    ||||||||||||||||| ||||||||| ||||||||||  |||||| |||| |||| || ||||  |||| ||||| ||||    
T  27211047 ataattaatgttgcattgaaacttaaatgtgacaagtattgtgaaacaaaattattcttaaaaatggacaaatattatgaa 27210967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 47038024 - 47037850
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  47038024 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 47037925  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaagcagagggagtagt 171  Q
    |||| |||||||||||||  || ||| |||| |||| || ||||  ||||  |||| |||| | |||||||||||    
T  47037924 acttgaaagtgacaagtattgtaaaacaaaattattctttaaaatagacaagtattatgaaacggagggagtagt 47037850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 23045451 - 23045316
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  23045451 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 23045352  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||| ||||||||  |||||| |||| ||||    
T  23045351 acttgaaagggacaagtattgtgaaacaaaattatt 23045316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 40562378 - 40562341
Alignment:
Q  77 ataattaatgttgcattaaaacttaaaagtgacaagta 114  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  40562378 ataattaatgttgcattgaaacttgaaagtgacaagta 40562341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 45 - 169
Target Start/End: Original strand, 7821 - 7945
Alignment:
Q  45 aataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacga 144  Q
    ||||||||||||||||||||||||| ||||  |||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||| || ||||||||    
T  7821 aataaataggtaagagtattattgacaaaccgataattaatgttgcattaaaacttgaaagtgacaagtaatgtgaattaaaattattctttaaaaacga 7920  T
Q  145 catatattgtgaagcagagggagta 169  Q
    ||  ||||||||| |||| ||||||    
T  7921 caagtattgtgaaacagatggagta 7945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 34242083 - 34242239
Alignment:
Q  4 acccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaactt 100  Q
    |||||||| |||||||||||||| ||| ||||||||   |||| ||||||||||||||  ||||||||||||||  ||| ||||| ||||||||||||||    
T  34242083 acccttacccatttattatttcattatgttatttctctctctacaataaataggtaaggatattattgataaaccaatatttaatattgcattaaaactt 34242182  T
Q  101 aaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    ||||||||| |||||| ||||| |||| |||| |  ||| ||||||| |||||||||    
T  34242183 aaaagtgaccagtaaaatgaaacaaaattattctctaaacacgacatgtattgtgaa 34242239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 19976436 - 19976593
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaact 99  Q
    |||||||||||  ||||||||||| | |||||||| ||| |||| ||||||||| |||   ||||||||||||||| ||||||||||||||||| |||||    
T  19976436 aatacccttacctatttattattttattatattatctctctctacaataaatagataatgatattattgataaactaataattaatgttgcattgaaact 19976535  T
Q  100 taaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    | ||||||||||||||| ||||| |||| |||| | ||||||| | |||||| |||||    
T  19976536 tgaaagtgacaagtaaaatgaaacaaaattattttccaaaaacaatatatatcgtgaa 19976593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 32839035 - 32838929
Alignment:
Q  63 ttattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaagcaga 162  Q
    ||||||||||||  ||||||||| ||||||| |||||| ||||||||||||||| ||||| |||| |||| |||||||||||||| ||||||||||||||    
T  32839035 ttattgataaacaaataattaatattgcattgaaacttgaaagtgacaagtaaaatgaaacaaaattattcttcaaaaacgacatgtattgtgaagcaga 32838936  T
Q  163 gggagta 169  Q
     ||||||    
T  32838935 tggagta 32838929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 39562059 - 39561895
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaact 99  Q
    ||||||||||  |||||||||||  | | |||||||||| |||| |||||||| ||||| |||||||||| ||||  ||||||||||||||||| ||| |    
T  39562059 aatacccttaaccatttattattgtattctattatttctctctacaataaataagtaagggtattattgacaaaccaataattaatgttgcattgaaatt 39561960  T
Q  100 taaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaagcagagggagta 169  Q
    ||||||||||     |||||||| |||| |||| | |||||||||||| ||||||||| | |||||||||    
T  39561959 taaaagtgac-----aagtgaaacaaaattattctccaaaaacgacatgtattgtgaaacggagggagta 39561895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 40757025 - 40756909
Alignment:
Q  55 taagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgt 154  Q
    |||| |||||||||||||||  ||||||||||||||||| |||||| |||||||||| |||||||||| |||| |||| | |||||  ||||  |||| |    
T  40757025 taagggtattattgataaaccaataattaatgttgcattgaaacttgaaagtgacaactaaagtgaaacaaaattattctccaaaatggacaagtattat 40756926  T
Q  155 gaagcagagggagtagt 171  Q
    ||| | |||||||||||    
T  40756925 gaaacggagggagtagt 40756909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 28110219 - 28110142
Alignment:
Q  45 aataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaa 122  Q
    |||||||| ||||| |||||||||||||||  ||||||||||||||||| |||||| ||| |||||||||| ||||||    
T  28110219 aataaatatgtaagggtattattgataaaccaataattaatgttgcattgaaacttgaaaatgacaagtaatgtgaaa 28110142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 22388307 - 22388175
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaact 99  Q
    ||||||||||  |||||||||||||| | |||| ||||| |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| |||||    
T  22388307 aatacccttaatcatttattatttcattttattttttctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaact 22388208  T
Q  100 taaaagtgacaagtaaagtgaaataaaactatt 132  Q
    | |||||||||||||  |||||| |||| ||||    
T  22388207 tgaaagtgacaagtattgtgaaacaaaattatt 22388175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 37284646 - 37284555
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| ||||||||||||||||||||| |||||||   ||||| ||||||||||| |||||| ||| ||||||||||||||||| |||| ||||    
T  37284646 tctacaataaataggtaagagtattagtgataaatcaataat-aatgttgcattgaaacttgaaaatgacaagtaaagtgaaacaaaattatt 37284555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 1002895 - 1002748
Alignment:
Q  8 ttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaa 104  Q
    |||| |||||||||||||| | ||||||||||   |||| ||||||||| ||||  ||| ||| ||||||  ||||||||||||||||| | | || |||    
T  1002895 ttactcatttattatttcattctattatttctctctctacaataaatagataaggatataattaataaaccaataattaatgttgcattgagatttgaaa 1002796  T
Q  105 gtgacaagtaaagtgaaataaaactattattcaaaaacgacatatatt 152  Q
     ||||||||||| | ||||||||  ||| | |||||||||| ||||||    
T  1002795 atgacaagtaaaataaaataaaataattctccaaaaacgacgtatatt 1002748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 39938275 - 39938410
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||||||    
T  39938275 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattaaa 39938374  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||||||||||||||||||  |||||| |||| ||||    
T  39938375 acttaaaagtgacaagtattgtgaaacaaaattatt 39938410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 4917880 - 4918026
Alignment:
Q  14 atttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgaca 110  Q
    ||||||||||||| | ||||||||||   ||||  ||||||||||||| | | |||||| || |  ||||||||||||| ||||||| |  |||||||||    
T  4917880 atttattatttcattctattatttctcactctaccataaataggtaagggaactattgacaagccaataattaatgttgaattaaaattcgaaagtgaca 4917979  T
Q  111 agtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    ||||| |||||  |||| | || |||||||| |||| ||||||||||    
T  4917980 agtaatgtgaagcaaaattgtttttcaaaaatgacaaatattgtgaa 4918026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 36447418 - 36447532
Alignment:
Q  52 aggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatat 151  Q
    ||||||| |||||||||||||||  ||||||||  ||||||| ||| || |||||||| | |||||||||| |||| |||| |  |||| |||||| |||    
T  36447418 aggtaagtgtattattgataaaccaataattaacattgcattgaaatttgaaagtgacgaataaagtgaaacaaaattattctctaaaagcgacatgtat 36447517  T
Q  152 tgtgaagcagaggga 166  Q
    |||||| | ||||||    
T  36447518 tgtgaaacggaggga 36447532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 3519013 - 3519147
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||   ||||||||||||| | |||| |||||   |||| |||||||| | ||| |||||||||| ||    |||||||||||| |||| |||    
T  3519013 aatacccttaataatttattatttcattttattttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttacattgaaa 3519112  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||| |||||||||||||  |||||| |||| ||||    
T  3519113 cttgaaagtgacaagtattgtgaaacaaaattatt 3519147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 1646392 - 1646527
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||  | ||| ||||||||||||| ||    
T  1646392 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagataatacttaatgttgcattgaa 1646491  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| ||||||| |||||  |||||| |||| ||||    
T  1646492 acttgaaagtgataagtattgtgaaacaaaattatt 1646527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 23366894 - 23367029
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||| ||| ||    
T  23366894 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgtattgaa 23366993  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||||||||  |||||| |||| ||||    
T  23366994 acttgaaagtgacaagtattgtgaaacaaaattatt 23367029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 71231 - 71353
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaa 139  Q
    |||| |||||||||||||| |||| ||| | ||||  ||||||||| ||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||    
T  71231 tctacaataaataggtaagggtataattaacaaaccaataattaattttgcattcaaacttaaaagtgacaagtaatgtgaaataaaattattcttcaaa 71330  T
Q  140 aacgacatatattgtgaagcaga 162  Q
    |||||||  ||||||||| ||||    
T  71331 aacgacaagtattgtgaaacaga 71353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 35866719 - 35866878
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    |||||||||| ||||||||||||| | | ||||||||||   |||| |||| ||| |||||||||||||||||||||  ||||||||||||| ||| |||    
T  35866719 aatacccttaaacatttattattttattctattatttctctctctacaatagatatgtaagagtattattgataaaccaataattaatgttgaattgaaa 35866818  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    ||| ||||||||||||||| ||||| |||| |||| | |||||  ||||  |||||||||    
T  35866819 cttgaaagtgacaagtaaaatgaaacaaaattattctccaaaatagacaagtattgtgaa 35866878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 45400899 - 45400770
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaa 139  Q
    |||| |||||||| |||||| ||||||||||||| | ||||||||||||||||| ||| ||||||||||||| |||||||||| |||| |||| | ||||    
T  45400899 tctacaataaataagtaagaatattattgataaattaataattaatgttgcattgaaatttaaaagtgacaaataaagtgaaacaaaattattctccaaa 45400800  T
Q  140 aacgacatatattgtgaagcagagggagta 169  Q
    |||||| | |||| |||| | |||||||||    
T  45400799 aacgacttgtattatgaaacggagggagta 45400770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 26628974 - 26628828
Alignment:
Q  14 atttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgaca 110  Q
    ||||||||||||| | ||||||||||   |||| |||||||||||||| ||||||||||||||   ||||||||||||||||| |||||| ||| |||||    
T  26628974 atttattatttcattctattatttctctctctacaataaataggtaagggtattattgataaatcaataattaatgttgcattgaaacttgaaaatgaca 26628875  T
Q  111 agtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    | |||||||||| |||| |||| | ||||| | |||| |||||||||    
T  26628874 aataaagtgaaacaaaattattctccaaaagcaacatgtattgtgaa 26628828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 28562527 - 28562669
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||| ||||||| |||||| |  |||||||||   || | |||||||||||||||||| |||||||||||  ||||||||||||||||| |||    
T  28562527 aatacccttactcatttatgatttcattcaattatttctctctcaaaaataaataggtaagagtaatattgataaaccaataattaatgttgcattgaaa 28562626  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactattattcaaaa 140  Q
    ||| ||||||||||||||| ||||| ||||  ||| |||||||    
T  28562627 cttgaaagtgacaagtaaaatgaaacaaaataattcttcaaaa 28562669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 28568036 - 28568153
Alignment:
Q  13 catttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgac 109  Q
    |||||||||||||| |  |||||||||   || | |||||||||||||| ||| |||||||||||  ||||||||||||||||| |||||| ||||||||    
T  28568036 catttattatttcattcaattatttctctctcaacaataaataggtaagggtaatattgataaaccaataattaatgttgcattgaaacttcaaagtgac 28568135  T
Q  110 aagtaaagtgaaataaaa 127  Q
    ||||||| ||||| ||||    
T  28568136 aagtaaaatgaaacaaaa 28568153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 28575629 - 28575746
Alignment:
Q  13 catttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgac 109  Q
    |||||||||||||| |  |||||||||   || | |||||||||||||| ||| |||||||||||  ||||||||||||||||| |||||| ||||||||    
T  28575629 catttattatttcattcaattatttctctctcaacaataaataggtaagggtaatattgataaaccaataattaatgttgcattgaaacttcaaagtgac 28575728  T
Q  110 aagtaaagtgaaataaaa 127  Q
    ||||||| ||||| ||||    
T  28575729 aagtaaaatgaaacaaaa 28575746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 20546448 - 20546322
Alignment:
Q  14 atttattatttcaatatattatttcttctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagt 113  Q
    ||||||||||||| |||||| |||  |||| |||||||| ||||| |||||||||| ||    ||||||||||||||||| |||| | ||||||||||||    
T  20546448 atttattatttcattatatttttttctctacaataaatatgtaagggtattattgacaagacaataattaatgttgcattgaaacctgaaagtgacaagt 20546349  T
Q  114 aaagtgaaataaaactattattcaaaa 140  Q
    |  |||||| |||| |||| |||||||    
T  20546348 attgtgaaacaaaattattcttcaaaa 20546322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 27564012 - 27563921
Alignment:
Q  25 caatatattatttct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaa 115  Q
    |||| |||||||||| |||| |||||||||||||| |||||||||| ||    ||||||||||||||||| |||||| ||||||||||||||    
T  27564012 caatttattatttctctctacaataaataggtaagggtattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagtaa 27563921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 10180983 - 10180910
Alignment:
Q  54 gtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaa 127  Q
    ||||| |||||||||| ||| |||||| |||||||||||| |||||| |||||||||||||| |||||| ||||    
T  10180983 gtaagggtattattgacaaattcataactaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaa 10180910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 30906781 - 30906712
Alignment:
Q  77 ataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgaca 146  Q
    ||||||||| ||||||||||| |||||||| |||||||| || |||||||| |||| |||||||||||||    
T  30906781 ataattaatattgcattaaaatttaaaagtaacaagtaatgtaaaataaaattattcttcaaaaacgaca 30906712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 13881126 - 13880992
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||  |||||||||||||| ||||||| ||||   |||| |||||||  |||||| ||||||| | |||   ||||||||| ||||||| |||    
T  13881126 aatacccttaatcatttattatttcattatattagttctctctctacaataaattagtaagattattattaacaaatcaataattaatattgcattgaaa 13881027  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||| ||||||||||||||  ||||| |||| ||||    
T  13881026 cttgaaagtgacaagtaatttgaaacaaaattatt 13880992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 27035101 - 27035235
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||  |||||||||||||| | |||| |||||   |||| | |||||| ||||| |||||||||| ||    ||||||||||||||||| |||    
T  27035101 aatacccttaaccatttattatttcattctattttttctctctctacagtaaatatgtaagggtattattgacaagacaataattaatgttgcattgaaa 27035200  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||| |||||||||||||  |||||| |||| ||||    
T  27035201 cttgaaagtgacaagtattgtgaaacaaaattatt 27035235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 43275571 - 43275436
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||  | ||||||||||||||||| ||    
T  43275571 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagataataattaatgttgcattgaa 43275472  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||||||||  |||||| |||| ||||    
T  43275471 acttgaaagtgacaagtattgtgaaacaaaattatt 43275436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 30999695 - 30999561
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||  |||||||||||||| | |||| |||||   |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| |||    
T  30999695 aatacccttaatcatttattatttcattttattttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 30999596  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||| ||||| |||||||  |||||| |||| ||||    
T  30999595 cttgaaagtaacaagtattgtgaaacaaaattatt 30999561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 39151522 - 39151600
Alignment:
Q  13 catttattatttcaatatattatttct-tctataataaataggtaagagtattattgataaactcataattaatgttgc 90  Q
    |||||||||||| | | |||||||||| | || ||||||||||||||||||| ||||| || || ||||||||||||||    
T  39151522 catttattattttattctattatttctctttacaataaataggtaagagtatcattgacaagctaataattaatgttgc 39151600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 7147018 - 7147153
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  7147018 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 7147117  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||||||||  |||||| |||| ||||    
T  7147118 acttgaaagtgacaagtattgtgaaacaaaattatt 7147153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 11174395 - 11174260
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  11174395 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 11174296  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||||||||  |||||| |||| ||||    
T  11174295 acttgaaagtgacaagtattgtgaaacaaaattatt 11174260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 40058475 - 40058340
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  40058475 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 40058376  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||||||||  |||||| |||| ||||    
T  40058375 acttgaaagtgacaagtattgtgaaacaaaattatt 40058340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 40918903 - 40918768
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  40918903 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 40918804  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||||||||  |||||| |||| ||||    
T  40918803 acttgaaagtgacaagtattgtgaaacaaaattatt 40918768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 2540059 - 2539967
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| |||||| |||||||||||||  |||||| |||| ||||    
T  2540059 tctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattatt 2539967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 11646497 - 11646380
Alignment:
Q  1 aatacccttacacatttattatttcaatata-ttatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | || || |||||   |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  11646497 aatacccttaatcatttattatttcattttacttttttctctctctacaataaatatgcaagggtattattgacaagtcaataattaatgttgcattgaa 11646398  T
Q  97 acttaaaagtgacaagta 114  Q
    |||| |||||||||||||    
T  11646397 acttgaaagtgacaagta 11646380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 37510423 - 37510510
Alignment:
Q  45 aataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||||||||| ||||| ||| ||||| ||| | | ||||||| || |||| |||||||||||||| ||||||| ||||| |||| ||||    
T  37510423 aataaatagataagaatataattgacaaattaagaattaattttacattgaaacttaaaagtgataagtaaaatgaaacaaaattatt 37510510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 3585599 - 3585673
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagta 114  Q
    |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| |||||| |||||||||||||    
T  3585599 tctacaataaatatgcaagggtattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagta 3585673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 36068228 - 36068302
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagta 114  Q
    |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| |||||| |||||||||||||    
T  36068228 tctacaataaatatgcaagggtattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagta 36068302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 37345676 - 37345811
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  37345676 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 37345775  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| ||| |||||||||  |||||| |||| ||||    
T  37345776 acttgaaaatgacaagtattgtgaaacaaaattatt 37345811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 3091622 - 3091765
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaact 99  Q
    ||||||||||  |||||||||||||| | ||| |||||| |||| |||||||| ||||| |||||||||| ||||  ||| ||||||||||||| |||||    
T  3091622 aatacccttaaccatttattatttcattctat-atttctctctacaataaatatgtaagggtattattgacaaaccaatatttaatgttgcattgaaact 3091720  T
Q  100 taaaagtgacaagtaaagtgaaataaaactattattcaaaaacga 144  Q
    ||||| ||||||||||||||||| |||| |||| || ||||||||    
T  3091721 taaaaatgacaagtaaagtgaaacaaaattattcttaaaaaacga 3091765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 16662199 - 16662358
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||  |||||||||||| | |||||| |||||   |||| |||||||||||||| |||||| ||| |||   ||||||||||||||||| |||    
T  16662199 aatacccttaaccatttattattttattatattctttctctatctacaataaataggtaagggtattaatgacaaatcaataattaatgttgcattgaaa 16662298  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    ||| ||||||||||||||  | ||| |||| |||| |||||||  ||||  |||||||||    
T  16662299 cttgaaagtgacaagtaatttaaaacaaaattattcttcaaaagtgacaagtattgtgaa 16662358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 17636559 - 17636718
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaa 97  Q
    ||||||||||  |||||||||||| | |||||| |||||   |||| |||||||||||||| |||||| ||| |||   ||||||||||||||||| |||    
T  17636559 aatacccttaaccatttattattttattatattctttctctatctacaataaataggtaagggtattaatgacaaatcaataattaatgttgcattgaaa 17636658  T
Q  98 cttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    ||| ||||||||||||||  | ||| |||| |||| |||||||  ||||  |||||||||    
T  17636659 cttgaaagtgacaagtaatttaaaacaaaattattcttcaaaagtgacaagtattgtgaa 17636718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 24456894 - 24456780
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaa 139  Q
    |||| |||| ||||| ||| |||||||||||||| |  || ||||||||||||| |||||| | ||||||||||||||| ||| |||| |||| ||||||    
T  24456894 tctacaatacataggcaagggtattattgataaattagtagttaatgttgcattgaaacttgagagtgacaagtaaagttaaacaaaattattcttcaaa 24456795  T
Q  140 aacgacatatattgt 154  Q
    | |||||| ||||||    
T  24456794 agcgacatgtattgt 24456780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 28200472 - 28200565
Alignment:
Q  64 tattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaa 157  Q
    |||||| |||| ||| ||||||| || |||||||||||||||||||||||||||||||| |||| | || || |||||||||| ||||| ||||    
T  28200472 tattgacaaacacattattaatgctgtattaaaacttaaaagtgacaagtaaagtgaaacaaaattgttcttaaaaaacgacaaatattatgaa 28200565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 27941124 - 27941026
Alignment:
Q  30 tattatttctt-ctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaa 127  Q
    ||||||||||| ||| |||||||| ||||| |||||||||| || |  ||||||||||||||| | |||||| |||||||||||||| |||||| ||||    
T  27941124 tattatttctttctacaataaataagtaagggtattattgacaagccaataattaatgttgcaatgaaacttgaaagtgacaagtaatgtgaaacaaaa 27941026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 169
Target Start/End: Original strand, 16360549 - 16360653
Alignment:
Q  64 tattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaaacgacatatattgtgaagcagag 163  Q
    |||||| ||||  ||| ||||||||| ||| |||||| |||||||||||||||||| ||  ||| |||| | ||||||||||| |||||||||| ||||     
T  16360549 tattgacaaaccaatatttaatgttgtattgaaacttgaaagtgacaagtaaagtg-aagcaaattattctccaaaaacgacaaatattgtgaaacagaa 16360647  T
Q  164 ggagta 169  Q
    ||||||    
T  16360648 ggagta 16360653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 25614525 - 25614390
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  25614525 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 25614426  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||||||||||||||||||  |||||| |||| ||||    
T  25614425 acttaaaagtgacaagtattgtgaaacaaaattatt 25614390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 7743490 - 7743427
Alignment:
Q  77 ataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactattattcaaaa 140  Q
    ||||||||  ||||||| |||||||||| |||||| ||||||||||||||| |||| |||||||    
T  7743490 ataattaacattgcattgaaacttaaaaatgacaaataaagtgaaataaaattattcttcaaaa 7743427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 37983300 - 37983366
Alignment:
Q  61 tattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaa 127  Q
    ||||||||| ||||| |||||||||||| |||| | | ||||||||||||| |||| ||||||||||    
T  37983300 tattattgacaaactaataattaatgttacattgatatttaaaagtgacaaataaaatgaaataaaa 37983366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 40349110 - 40349184
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagta 114  Q
    |||| |||||||| | ||| ||||||||||  ||   ||||||||||||||||| ||||||||||||||||||||    
T  40349110 tctacaataaatatgcaagggtattattgaccaaacaataattaatgttgcattgaaacttaaaagtgacaagta 40349184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 10981613 - 10981748
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatt---tct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| ||   ||| |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  10981613 aatacccttaatcatttattatttcattttatttttctctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 10981712  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||||||||  |||||| |||| ||||    
T  10981713 acttgaaagtgacaagtattgtgaaacaaaattatt 10981748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 27813916 - 27814051
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  27813916 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaacacaataattaatgttgcattgaa 27814015  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||||||||  |||||| |||| ||||    
T  27814016 acttgaaagtgacaagtattgtgaaacaaaattatt 27814051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 36453296 - 36453161
Alignment:
Q  1 aatacccttacacatttattatttcaatatattattt---ct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaa 96  Q
    ||||||||||  |||||||||||||| | |||| |||   || |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| ||    
T  36453296 aatacccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaa 36453197  T
Q  97 acttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||||||||  |||||| |||| ||||    
T  36453196 acttgaaagtgacaagtattgtgaaacaaaattatt 36453161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 47110598 - 47110690
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||| |||||||| | ||| |||||||||| ||    ||||||||||||||||| |||||| |||||||||||||  |||||| |||| ||||    
T  47110598 tctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattatt 47110690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 8380086 - 8380168
Alignment:
Q  40 tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaagtgaaa 122  Q
    |||| |||||||| ||||| ||||| || | ||||  |||| |||||||| ||| |||||||||||||||||  |||||||||    
T  8380086 tctacaataaataagtaagggtatttttaacaaaccaataactaatgttgtattgaaacttaaaagtgacaaaaaaagtgaaa 8380168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 15491 - 15370
Alignment:
Q  2 atacccttacacatttattatttcaatatattatttct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaactt 100  Q
    |||||||||  |||||||||||||| |  ||||||||| |||| |||||| | ||||| |||||||||| ||||  ||||||||||||||||| ||||||    
T  15491 atacccttaaccatttattatttcattcaattatttctctctacaataaaaaagtaagcgtattattgacaaaccgataattaatgttgcattgaaactt 15392  T
Q  101 aaaagtgacaagtaaagtgaaa 122  Q
    |||||| ||| |||||||||||    
T  15391 aaaagttacatgtaaagtgaaa 15370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 10862 - 10967
Alignment:
Q  13 catttattatttcaatatattatttct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaa 111  Q
    |||||||||||||| |||||||||||| || | ||||||||||||||| ||||||||| |||   ||| ||||||||||||  ||||||||| |||||||    
T  10862 catttattatttcactatattatttctctccacaataaataggtaagaatattattgacaaatcaatatttaatgttgcatataaacttaaatgtgacaa 10961  T
Q  112 gtaaag 117  Q
    ||||||    
T  10962 gtaaag 10967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 65335 - 65202
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatttct-tctata-ataaataggtaagagtattattgataaactcataattaatgttgcattaaaac 98  Q
    ||||||||||  |||||||||||||| | |||| ||||| | | || |||||||| |||| |||||||||| ||||  ||||||||| ||||||| |||     
T  65335 aatacccttaaccatttattatttcattctattttttctctttctacataaatagataagggtattattgacaaaccaataattaatattgcattgaaat 65236  T
Q  99 ttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||||||||||||||||  ||||| |||| ||||    
T  65235 ttaaaagtgacaagtaatatgaaacaaaattatt 65202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 437 - 304
Alignment:
Q  1 aatacccttacacatttattatttcaatatattatt-tct-tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaac 98  Q
    ||||||||||  |||||||||||||| | |||| || ||| |||| |||||||| ||||   ||||||||| ||    |||||||||||||||||||||     
T  437 aatacccttaatcatttattatttcattctatttttctctctctacaataaatatgtaatgatattattgacaagacaataattaatgttgcattaaaat 338  T
Q  99 ttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    ||||||||||||||||  |||||| |||| ||||    
T  337 ttaaaagtgacaagtattgtgaaacaaaattatt 304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 7056 - 6907
Alignment:
Q  16 ttattatttcaatatattatttct---tctataataaataggtaagagtattattgataaactcataattaatgttgcattaaaacttaaaagtgacaag 112  Q
    ||||||||| | |||||||||| |   |||| |||||||| |||||||||||||||| |     ||||||||||||||||| ||||||||| | |||||     
T  7056 ttattattttattatattatttttctctctacaataaataagtaagagtattattgacacgtcaataattaatgttgcattgaaacttaaacg-gacaaa 6958  T
Q  113 taaagtgaaataaaactattattcaaaaacgacatatattgtgaagcagag 163  Q
    |||  ||||| |||| |||| | |||||||||||  ||||||||| |||||    
T  6957 taatatgaaacaaaattattctccaaaaacgacaagtattgtgaaacagag 6907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0939 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 1110 - 1165
Alignment:
Q  61 tattattgataaactcataattaatgttgcattaaaacttaaaagtgacaagtaaa 116  Q
    ||||||||||||||  ||||||||||||||||  |||||||||| |||||||||||    
T  1110 tattattgataaaccaataattaatgttgcatcgaaacttaaaaatgacaagtaaa 1165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 349 - 401
Alignment:
Q  80 attaatgttgcattaaaacttaaaagtgacaagtaaagtgaaataaaactatt 132  Q
    |||||||||||||| |||||| |||||||||||||  |||||| |||| ||||    
T  349 attaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattatt 401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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