View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_low_31 (Length: 236)
Name: NF2442_low_31
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_low_31 |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 888053 - 888255
Alignment:
| Q |
16 |
atgaatcatcaaaaggaatcaagattcaaaatgagactcgtatccaaaataacataaccatttgatttacaatgtgtgcatcgattttggatatcgaatc |
115 |
Q |
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| T |
888053 |
atgaatcatcaaaaggaatcaagattcaaaatgagactcgtatccaaaataacataaccatttgatttacaatgtgtgcatcgattttggatatcgaatc |
888152 |
T |
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| Q |
116 |
aagatatgacacgcatatattgtgagaagatactccaaatttatgttacgactatcttaactaattttctctgtgcattctgcttatagttatagctaat |
215 |
Q |
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| T |
888153 |
aagatatgacacgcatatattgtgagaagatactccaaatttatgttacgactatcttaactaattttctctgtgcattctgcttatagttatagctaat |
888252 |
T |
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| Q |
216 |
aag |
218 |
Q |
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||| |
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| T |
888253 |
aag |
888255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 1003034 - 1002916
Alignment:
| Q |
16 |
atgaatcatcaaaaggaatcaagattcaaaatgagactcgtatccaaaataacataaccatttgatttacaatgtgtgcatcgattttggatatcgaatc |
115 |
Q |
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|||| |||| |||||||||||||||||||||||| | || |||| |||||| |||||||| ||||| ||||||| |||||||||| |||||||||| |
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| T |
1003034 |
atgattcattaaaaggaatcaagattcaaaatgatattcatatc----ataacaaaaccatttcatttaaaatgtgt--atcgattttgaatatcgaatc |
1002941 |
T |
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| Q |
116 |
aagatatgacacgcatatattgtga |
140 |
Q |
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| T |
1002940 |
aagttacgactcacatatatcgtga |
1002916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 16616 - 16553
Alignment:
| Q |
158 |
atgttacgactatcttaactaattttctct--gtgcattctgcttatagttatagctaataagt |
219 |
Q |
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| T |
16616 |
atgttatgactatcttaagtaactttctctatgtgcattctgcttatagttatagctaataagt |
16553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 48301392 - 48301343
Alignment:
| Q |
167 |
ctatcttaactaattttctctgtgcattctgcttatagttatagctaata |
216 |
Q |
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| T |
48301392 |
ctatcttaactaattttctctgcgcagtctgcttatagtcatagctaata |
48301343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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