View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_low_32 (Length: 230)
Name: NF2442_low_32
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 29584895 - 29584733
Alignment:
| Q |
49 |
gaactcagtcagttacatggattctgtgtatatgaatcctgctgaaccggttgaagctcgaatcaaaaaccttctttctcttatgactttgaaagagaag |
148 |
Q |
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| T |
29584895 |
gaactcagtcagttgcatggattctgtgtatatgaatcccgctgaaccggttgaagctcgaatcaaaaaccttctttctcttatgactttgaaagagaag |
29584796 |
T |
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| Q |
149 |
attggtcagatgactcaaattgaacgctctgttactactccttctgccataaaagacttcgcc |
211 |
Q |
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| T |
29584795 |
attggtcagatgactcaaattgaacgctctgttactactccttctgccataaaagacttcgcc |
29584733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 49 - 204
Target Start/End: Original strand, 29610012 - 29610167
Alignment:
| Q |
49 |
gaactcagtcagttacatggattctgtgtatatgaatcctgctgaaccggttgaagctcgaatcaaaaaccttctttctcttatgactttgaaagagaag |
148 |
Q |
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| T |
29610012 |
gaactaagtcagatacatggattccgtgtataggaatcccactgaaacggttgaagatcgcatcaaaaaccttctttctcttatgacattgaaagagaag |
29610111 |
T |
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| Q |
149 |
attggtcagatgactcaaattgaacgctctgttactactccttctgccataaaaga |
204 |
Q |
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| T |
29610112 |
attggtcagatgacccaaattgaacgttctgttactactccttctgccattaaaga |
29610167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29584965 - 29584920
Alignment:
| Q |
1 |
catttcaccatttggatatcaaatctgcagcaacagtaactgcaaa |
46 |
Q |
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| T |
29584965 |
catttcaccatttggatatcaaatctgcagtaacagtaactgcaaa |
29584920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 25130358 - 25130252
Alignment:
| Q |
99 |
ttgaagctcgaatcaaaaaccttctttctcttatgactttgaaagagaagattggtcagatgactcaaattgaacgctctgttactactccttctgccat |
198 |
Q |
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|||||||||| ||||| |||||||||| | |||||| | || |||||||||||||| |||| |||||||||||| ||||| |||||||||||| ||| |
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| T |
25130358 |
ttgaagctcgtatcaaggaccttctttcacgcatgactctcaacgagaagattggtcaaatgatccaaattgaacgcactgttgctactccttctgtcat |
25130259 |
T |
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| Q |
199 |
aaaagac |
205 |
Q |
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|||||| |
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| T |
25130258 |
caaagac |
25130252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 11248085 - 11248045
Alignment:
| Q |
131 |
atgactttgaaagagaagattggtcagatgactcaaattga |
171 |
Q |
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||||||||| | ||||||||||||||||||||||| ||||| |
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| T |
11248085 |
atgactttggaggagaagattggtcagatgactcagattga |
11248045 |
T |
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