View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_low_4 (Length: 516)
Name: NF2442_low_4
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 16 - 505
Target Start/End: Original strand, 9443060 - 9443549
Alignment:
| Q |
16 |
caaatgctgcaccaattatagctcctgcagaagccatactaacaatggtttcctgcataataaaacaattaagtcagccatcttgaaattggacttaaat |
115 |
Q |
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| T |
9443060 |
caaatgctgcaccaattatagctcctgcagaagccatactaacaatggtttcctgcataataaaacaattaagtcagccatcttgaaattggacttagat |
9443159 |
T |
|
| Q |
116 |
tctctgcggtgaggagaattacaaaatcgaagtcaagagatgtcagtcgtttaataaagatctctaggctggcattttggcttcatcgagtttgttttaa |
215 |
Q |
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| T |
9443160 |
tctctgcggtgaggagaattacaaaatcgaagtcaagagatgtcagtcgtttaataaagatctctaggctggcattttggcttcatcgagtttgttttaa |
9443259 |
T |
|
| Q |
216 |
aatataactcgaaatataggtcgttggatcttcatctaacgactaagatatgtgattttatggaaaattgcatccaaagttgattctaactcgaaactag |
315 |
Q |
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| T |
9443260 |
aatataactcgaaatataggtcgttggatcttcatctaacgactaagatatgtgattttatggaaaattgcttccaaagttgattctaactcgaaactag |
9443359 |
T |
|
| Q |
316 |
aacttatagtttttgtctctaccattgatttttattcttaaatttatcgtttagttttagcgcatgtttgttaacctggtatactaccatgatttttgcg |
415 |
Q |
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| T |
9443360 |
aacttatagtttttgtctctaccattgatttttattcttaaatttatggtttagttttagcgcatgtttgtaaacctggtatactaccatgatttttgcg |
9443459 |
T |
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| Q |
416 |
aagccggaaatcagagagttgggaaacatacgaacaaacactgatgtagccatgattaattttttataaccaattcattcaaattatatt |
505 |
Q |
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| T |
9443460 |
aagccggaaatcagagagttgggaaacatacgaacaaacactgatgtagccatgattaagtttttataaccaattcattcaaactatatt |
9443549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 16 - 349
Target Start/End: Original strand, 9454322 - 9454661
Alignment:
| Q |
16 |
caaatgctgcaccaattatagctcctgcagaagccatactaacaatggtttcctgcataataaaacaattaagtcagccatcttgaaattggacttaaat |
115 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| || |
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| T |
9454322 |
caaatgctgcaccaactatagctcctgcaacagccatactaacaatggtttcctgcataataaaacaatcaagtcaaccatcttgaaattggacttagat |
9454421 |
T |
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| Q |
116 |
tctctgcggtgaggagaattacaaaatc--gaagtcaagagatgtcagtcgtttaataaagatctctaggctggcattttggcttcatcgagtttgtttt |
213 |
Q |
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| T |
9454422 |
tttctgcagcgaggagattcacaaagtcgtgaagtgaaatgatgacagttgttggaggaagatccagatgttggcattttgacttcgtcaagttcgttta |
9454521 |
T |
|
| Q |
214 |
aaaatataactcgaaatataggtcgttggatcttcatctaacgactaagatatgtgat----tttatggaaaattgcatccaaagttgattctaactcga |
309 |
Q |
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| T |
9454522 |
aaaatataactcgaaatataggtcgttggatcttcatctaatgactaagatgcgtaattgtgtttatgcaaaattgcctccaatattgattataaattga |
9454621 |
T |
|
| Q |
310 |
aactagaacttatagtttttgtctctaccattgattttta |
349 |
Q |
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||||||| || || ||||||||||||| |||||| |||| |
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| T |
9454622 |
gactagaatttgtattttttgtctctacaattgatattta |
9454661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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