View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_low_5 (Length: 495)
Name: NF2442_low_5
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 29717544 - 29717256
Alignment:
| Q |
14 |
tgttggagaagcaatggatttataagccaagtctagtctatgagtgatacatagtacttatttggattgagtgcttaaaagttaacatttccctttttga |
113 |
Q |
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| T |
29717544 |
tgttggagaagcaatggatttataagccaagtctagtctatgagtgatacatagtacttatttggattgagtgcttaaaagttaacatttccctttttga |
29717445 |
T |
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| Q |
114 |
ctacattgttaatggagatgtaaaggatgaaagcaatttgtaattcttctcttagtgatatttttaaagagatcaacatagttacttttatggcaaacta |
213 |
Q |
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| T |
29717444 |
ctacattgttaatggagatgtaaaggatgaaagcaatttgtaattcttctcttagtgatatttttaaagagatcaacatagttacttttatggcaaacta |
29717345 |
T |
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| Q |
214 |
aatacttttttctttcaaattttatctatgaaatgcatttttcaacatatatatgcatattggctgatttaacttttatcatacttcac |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
29717344 |
aatacttttttctttcaaattttatctatgaaatgcatttttcaacatatatatgcatactggccgatttaacttttatcatacttcac |
29717256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 367 - 481
Target Start/End: Complemental strand, 29717239 - 29717129
Alignment:
| Q |
367 |
ttcacaacatgtgtactaaagataatcacatgtaaatgcacttaaagtcaatgatagttgttcgattgtgctaaaaatgcatatcttgcatcagagtatt |
466 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| |
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| T |
29717239 |
ttcacatcatgtgtactaaagataatcacatgtaaatgcacttaaagtcaatgatatatat----ttgtgctaaaaatgcatatcttgcatcagagtatt |
29717144 |
T |
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| Q |
467 |
tattctaacatttgt |
481 |
Q |
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| T |
29717143 |
tattctaacatttgt |
29717129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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