View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_low_6 (Length: 490)
Name: NF2442_low_6
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 3 - 476
Target Start/End: Original strand, 54321773 - 54322246
Alignment:
| Q |
3 |
tataccaatatcaacattgtttgcacacaataatagatcctagaaagcatgcctattaatcaatattatccttattaacaacacatcatccaataccact |
102 |
Q |
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||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54321773 |
tatactaatatcaacattgtttgcacacaatcatagttcctagaaagcatgcctattaatcaatattatccttattaacaacacatcatccactaccact |
54321872 |
T |
|
| Q |
103 |
tgaacaaaatctatataaacctcccaaattaatcaacataatccaaaatttgattaatacaaatcaatgttagactcgttatgtagtgctgacatgtcca |
202 |
Q |
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| T |
54321873 |
tgaacaaaatctatataaacctcccaaattaatcaacataatccaaaatttgattaatacaaatcaatgttagactcgttatgtagtgctgacatgtcca |
54321972 |
T |
|
| Q |
203 |
tcaccactattgctaaacagccaatattcctactcacgtgttttttataagtcaattttgaaataaagtcaaacatattattaagcaccaaattaatgta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54321973 |
tcaccactattgctaaacagccaatattcctactcacgtgttttttataagtcaattttgaaataaagtcaaacatattattaagcaccaaattaatgta |
54322072 |
T |
|
| Q |
303 |
cgtttgttacttcaaaggcagttaggcacaacacaagtcaaacaactcaatttttccatcacttctgcttccttatattgagccacaattgtacctgata |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54322073 |
cgtttgttacttcaaaggcagttaggcacaacacaagtcaaacaactcaatttttccatcacttctgcttccttatattgagccacaattgtacctgata |
54322172 |
T |
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| Q |
403 |
tgacacattcctcagtttctttctacatttctttcacnnnnnnnctccttcattcagataaaagacataataat |
476 |
Q |
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| T |
54322173 |
tgacacattcctcagtttctttctacatttctttcactttttttctccttcattcagataaaagacataataat |
54322246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 439
Target Start/End: Complemental strand, 38241556 - 38241133
Alignment:
| Q |
4 |
ataccaatatcaacattgtttgcacacaataatagatcctagaaagcatgcctattaatcaatattatccttattaacaacacatcatccaataccactt |
103 |
Q |
| |
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||||||||||||||||||| ||||||||| |||| ||| |||||| ||| ||||||||| |||||||||| |||||||| |||||||| || ||||| |
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| T |
38241556 |
ataccaatatcaacattgtcagcacacaatcatagttccctgaaagcgtgcgaattaatcaagattatccttaataacaacatatcatccactaacactt |
38241457 |
T |
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| Q |
104 |
gaacaaaatctatataaacctcccaaattaatcaacataatccaaaatttgattaatacaaatcaatgttagactcgttatgtagtgctgacatgtccat |
203 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | || |||||| |||| |||||||||||| |
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| T |
38241456 |
gaacaaaatctaag--aacctaccaaattaatcaacataatccaaaatttgattaataaaaatcaatgtttggcttgttatgcagtgttgacatgtccat |
38241359 |
T |
|
| Q |
204 |
caccactattgctaaacagccaatattcctactcacgtgttttttataagtcaattttgaaataaagtcaaacatattattaagcaccaaattaat--gt |
301 |
Q |
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|| |||||||| |||| |||||| |||||| ||| | ||||| |||||| |||||| |||||||||||||||||||| ||||||||||||| || |
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| T |
38241358 |
aactactattgc--aacaaccaataatcctacccacatcttttt-ataagt-aattttaaaataaagtcaaacatatta---agcaccaaattaacacgt |
38241266 |
T |
|
| Q |
302 |
acgtttgttacttcaaaggcagttaggcacaacacaagtcaaacaactcaatttttccatcacttctgcttccttatattgagccacaattgtacctgat |
401 |
Q |
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|||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| |
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| T |
38241265 |
acgtttgttacttcaatgacagttaggcacaacacaa-----acaactcaatttttccatcacttttgcttccttatattgagccacgattgtacttgaa |
38241171 |
T |
|
| Q |
402 |
atgacacattcctcagtttctttctacatttctttcac |
439 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
38241170 |
atgagacattactcagtttctttctacatttctttcac |
38241133 |
T |
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