View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2442_low_7 (Length: 476)
Name: NF2442_low_7
Description: NF2442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2442_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 42 - 457
Target Start/End: Complemental strand, 2749314 - 2748890
Alignment:
| Q |
42 |
atataaaaaacgtaaattgcgtagctgaaatgattaacataatttgtgatggtctcaataaaagcattgatgatcaaaagtaattaaaattaataatgaa |
141 |
Q |
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| T |
2749314 |
atataagaaacgtaaattgcgtagctgaaatgattaacataatttgtgatggtctcaataaaagcattgatgatcaaaagtaattaaaattaataatgaa |
2749215 |
T |
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| Q |
142 |
tnnnnnnn-tggaaatattataattagtgcattattcgtcnnnnnnnnnt-------tagtgcatgattgattttctttgaggattattagtgcatgatt |
233 |
Q |
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| T |
2749214 |
taaaaaaaatggaaatattataattagtgcattattcgtcaaaaaaaataaaaaaaatagtgcatgattgattttctttgaggattattagtgcatgatt |
2749115 |
T |
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| Q |
234 |
gatgattatagttctaa-tctaaactttctattcttctgaaaacagaaacacaagaatattggtgtatgattgatacgctatctgtaacattattatcct |
332 |
Q |
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| T |
2749114 |
gatgattatagttctaaatctaaactttctattcttctgaaaacagaaacacaagaatattggtgtatgattgatacgctatctgtaacattattatcct |
2749015 |
T |
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| Q |
333 |
acgcgtaacaaattaaagtcacaggttatagttgcaacattatatataacacacaacagaagagtagccaagtaagttaatattgttcaaatcaaacact |
432 |
Q |
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| T |
2749014 |
acgcgtaacaaattaaagtcacaggttatagttgcaacattatatataacacataacaaaagagtagccaagtaagttaatattgttcaaatcaaacact |
2748915 |
T |
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| Q |
433 |
gtttaacacagttacaacatgggtc |
457 |
Q |
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| T |
2748914 |
gtttaacacagttacaacatgggtc |
2748890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 2749754 - 2749714
Alignment:
| Q |
10 |
attatactgagtctattgtgcagagttgtgctatataaaaa |
50 |
Q |
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| T |
2749754 |
attatactgagtctattgtgcagagttgtgctatataaaaa |
2749714 |
T |
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