View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2444_low_2 (Length: 443)
Name: NF2444_low_2
Description: NF2444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2444_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 19329417 - 19329627
Alignment:
| Q |
1 |
ggatatgtttcaggagttttagttttatatatcttgtagcaatcatagatgaagtttgaaacgcttttaatagaaaataaacatatgtttgaagaatgct |
100 |
Q |
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| T |
19329417 |
ggatatgtttcaggagttttagttttatatatcttgtagcaatgatagatgaagtttgaaatgcttttaatagaaaataaacaaatgcttgcagaatgct |
19329516 |
T |
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| Q |
101 |
ggtctgagagatattgcacacatagctgacacctttttaacaaaagcgttagatccacagcaaatcgaatcaatatctcggatacgatatattgcccatg |
200 |
Q |
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| T |
19329517 |
ggtctgagagatattgcacacatagcagacaccttttcaacaaaagggttagatccacaacaaatcgaatcaatatctcggatacgatatattgcccatg |
19329616 |
T |
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| Q |
201 |
aatgtttgaga |
211 |
Q |
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||||||||||| |
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| T |
19329617 |
aatgtttgaga |
19329627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 250 - 427
Target Start/End: Original strand, 19329810 - 19329987
Alignment:
| Q |
250 |
tgatgttggccaattgcatctaagtcatatggatagagagatggaccatcatgctcaattatgtaccattgaaagtgcagttagttttgtccatatgatt |
349 |
Q |
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| T |
19329810 |
tgatgttggccaattgcatctaagtcatatggatagagagatggacaatcatgcacaattatgtaccgtagaaagtgcagttagttctgtccatatgatt |
19329909 |
T |
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| Q |
350 |
catgcagatgccgatgctgagaatatgcacctctgcgatgcacacctcagtgttgatcaatcagatcttggttatgaa |
427 |
Q |
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| T |
19329910 |
catgcagatgccaatgctgagaatatgcacctttgcgatgcacacctcagtgttgatcaatcagatcttgtttatgaa |
19329987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 36 - 211
Target Start/End: Original strand, 19356372 - 19356549
Alignment:
| Q |
36 |
gtagcaatcatagatgaagtttgaaacgcttttaatagaaaataaacatatgtttgaagaatgctggtctgagagatattgcacacata--gctgacacc |
133 |
Q |
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| T |
19356372 |
gtagcaatcatagatgaagtttgaaatgatttatatagaagatacacacatgcttgcagaatgctggtctgagaaatattgcacacatatagcagacatc |
19356471 |
T |
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| Q |
134 |
tttttaacaaaagcgttagatccacagcaaatcgaatcaatatctcggatacgatatattgcccatgaatgtttgaga |
211 |
Q |
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| T |
19356472 |
ttttcaacaaaagggttagatccataactaatcgaatcaatatctcggatacaatatattgcacatgaatgttggaga |
19356549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 19356662 - 19356715
Alignment:
| Q |
374 |
atgcacctctgcgatgcacacctcagtgttgatcaatcagatcttggttatgaa |
427 |
Q |
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| T |
19356662 |
atgcacctttgcgatgcacacctcagtgttgatcaatcagatcttgtttatgaa |
19356715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 17724034 - 17723936
Alignment:
| Q |
254 |
gttggccaattgcatctaagtcatatggatagagagatggaccatcatgctcaattatgtaccattgaaagtgcagttagttttgtccatatgattcat |
352 |
Q |
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| T |
17724034 |
gttggccaattgaatttaagtcatatggaaagagagatggatcatcatgcacggctatgtgctgcggaaagtgcagtttgttctgtccttatgattcat |
17723936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 19025263 - 19025165
Alignment:
| Q |
254 |
gttggccaattgcatctaagtcatatggatagagagatggaccatcatgctcaattatgtaccattgaaagtgcagttagttttgtccatatgattcat |
352 |
Q |
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| T |
19025263 |
gttggccaattgaatttaagtcatatggaaagagagatggatcatcatgcacggctatgtgctgcggaaagtgcagtttgttctgtccttatgattcat |
19025165 |
T |
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