View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2444_low_3 (Length: 351)

Name: NF2444_low_3
Description: NF2444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2444_low_3
NF2444_low_3
[»] chr5 (2 HSPs)
chr5 (1-351)||(37073243-37073593)
chr5 (199-282)||(578468-578551)
[»] chr2 (3 HSPs)
chr2 (199-309)||(8420629-8420739)
chr2 (199-311)||(6531599-6531710)
chr2 (210-289)||(33439552-33439631)
[»] chr6 (1 HSPs)
chr6 (202-311)||(6468186-6468295)
[»] chr1 (2 HSPs)
chr1 (199-282)||(11830227-11830310)
chr1 (199-289)||(26518415-26518505)
[»] chr7 (3 HSPs)
chr7 (199-311)||(385325-385438)
chr7 (200-311)||(2677250-2677361)
chr7 (242-311)||(24935388-24935457)
[»] chr4 (2 HSPs)
chr4 (230-311)||(25809788-25809869)
chr4 (199-289)||(38216776-38216866)
[»] scaffold0026 (1 HSPs)
scaffold0026 (223-311)||(92816-92904)
[»] scaffold0369 (1 HSPs)
scaffold0369 (237-309)||(8863-8935)


Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 37073593 - 37073243
Alignment:
Q  1 tcctctaaactattgtatattggattatattttatgtgtttagaaaagcgtgtgtatatctttattaannnnnnnnnncttccagcaatctttgttatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||    
T  37073593 tcctctaaactattgtatattggattatattttatgtgtttagaaaagcgtgtgtatatctttattaattttttttt--ttccagcaatctttgttatat 37073496  T
Q  101 tattaatgcaacagagaacttgtataggactgtaccnnnnnnngagagag--gacttgcacaggaaattaggtgacttttaaggtgcacaagtgtttaaa 198  Q
    ||||||||||||||||||||||||||||||||||||       |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37073495 tattaatgcaacagagaacttgtataggactgtaccaaaaaaagagagagaggacttgcacaggaaattaggtgacttttaaggtgcacaagtgtttaaa 37073396  T
Q  199 tttttgttgttgttaattctctatattgaactaaattataatgtttataagaaatcaccacattttactcgtcaattctaaaaagtataatatttttctc 298  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37073395 tttttgttgttgttaattctctatattgaactaaattacaatgtttataagaaatcaccacattttactcgtcaattctaaaaagtataatatttttttc 37073296  T
Q  299 attttatagtgtatatatatgtgtgcggagtgaacttgactagcatgtttcta 351  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37073295 attttagagtgtatatatatgtgtgcggagtgaacttgactagcatgtttcta 37073243  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 282
Target Start/End: Complemental strand, 578551 - 578468
Alignment:
Q  199 tttttgttgttgttaattctctatattgaactaaattataatgtttataagaaatcaccacattttactcgtcaattctaaaaa 282  Q
    ||||||||||||||||||||||| |||| ||| |||| || ||||||||||| ||||||||||||||||| ||| ||| |||||    
T  578551 tttttgttgttgttaattctctagattgtactgaattttagtgtttataagagatcaccacattttactcttcagttccaaaaa 578468  T

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Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 199 - 309
Target Start/End: Complemental strand, 8420739 - 8420629
Alignment:
Q  199 tttttgttgttgttaattctctatattgaactaaattataatgtttataagaaatcaccacattttactcgtcaattctaaaaagtataatatttttctc 298  Q
    |||||||||||||||||| | |  | || |||||||| |||||||||| ||||||||||||||||||||| ||||||| |||||||||||| ||| ||||    
T  8420739 tttttgttgttgttaattatatggactgtactaaattctaatgtttattagaaatcaccacattttactcatcaattccaaaaagtataatctttctctc 8420640  T
Q  299 attttatagtg 309  Q
    ||| |||||||    
T  8420639 attctatagtg 8420629  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 6531710 - 6531599
Alignment:
Q  199 tttttgttgttgttaattctctatattgaactaaattataatgtttataagaaatcaccacattttactcgtcaattctaaaaagtataatatttttctc 298  Q
    |||||||||||||||||| ||   |||| ||| |||| ||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||  |||    
T  6531710 tttttgttgttgttaattttcaggattgtactgaattctaatgtt-ataagaaatcaccacattttactcctcaattttaaaaagtataatatttccctc 6531612  T
Q  299 attttatagtgta 311  Q
    ||| |||||||||    
T  6531611 attctatagtgta 6531599  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 33439552 - 33439631
Alignment:
Q  210 gttaattctctatattgaactaaattataatgtttataagaaatcaccacattttactcgtcaattctaaaaagtataat 289  Q
    |||||||||||  || | |||||||| ||||||||||||||||| ||||||||||| || |||||| |||||| ||||||    
T  33439552 gttaattctctgaatcgtactaaattctaatgtttataagaaattaccacattttattcctcaattttaaaaattataat 33439631  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 311
Target Start/End: Complemental strand, 6468295 - 6468186
Alignment:
Q  202 ttgttgttgttaattctctatattgaactaaattataatgtttataagaaatcaccacattttactcgtcaattctaaaaagtataatatttttctcatt 301  Q
    ||||||||||||||||| | ||||| | | |||| |||||||||||||||||||||| ||||||||| ||| ||  |||||||||||| ||| |||| ||    
T  6468295 ttgttgttgttaattctttgtattgtaatgaattgtaatgtttataagaaatcaccatattttactcctcattttcaaaaagtataatttttctctcgtt 6468196  T
Q  302 ttatagtgta 311  Q
     |||||||||    
T  6468195 ctatagtgta 6468186  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 282
Target Start/End: Original strand, 11830227 - 11830310
Alignment:
Q  199 tttttgttgttgttaattctctatattgaactaaattataatgtttataagaaatcaccacattttactcgtcaattctaaaaa 282  Q
    ||||||||||||| |||||| |  |||| ||| |||| |||||||||||||||||||||||||||||||| ||||||| |||||    
T  11830227 tttttgttgttgtcaattctttggattgtactgaattctaatgtttataagaaatcaccacattttactcctcaattccaaaaa 11830310  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 26518415 - 26518505
Alignment:
Q  199 tttttgttgttgttaattctctatattgaactaaattataatgtttataagaaatcaccacattttactcgtcaattctaaaaagtataat 289  Q
    ||||||||||||||||||   |  |||| | | |||| ||||||||||||||||||| |||||||||||| ||||||  ||||||||||||    
T  26518415 tttttgttgttgttaattgcgtggattgtattgaattctaatgtttataagaaatcatcacattttactcctcaatttcaaaaagtataat 26518505  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 385438 - 385325
Alignment:
Q  199 tttttgttgttgttaattctctatattgaactaaattataatgtttataagaaatcaccacattttactcgtcaattctaaaaa-gtataatatttttct 297  Q
    ||||||||||||||||||||||  |||| ||| |||| |||||||||||||||||  ||| ||||||| | ||||||| ||||| |||||||||||  ||    
T  385438 tttttgttgttgttaattctctggattgtacttaattctaatgtttataagaaattgccatattttacccctcaattccaaaaacgtataatatttccct 385339  T
Q  298 cattttatagtgta 311  Q
    |||| |||| ||||    
T  385338 cattctataatgta 385325  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 2677250 - 2677361
Alignment:
Q  200 ttttgttgttgttaattctctatattga-actaaattataatgtttataagaaatcaccacattttactcgtcaattctaaaaagtataatatttttctc 298  Q
    |||| |||||||||||||| || ||||  ||| |||| ||||||||||||||||| | |||||||||||| ||||||| |||||||||||| |||   ||    
T  2677250 ttttattgttgttaattctttagattggtactgaattctaatgtttataagaaat-atcacattttactcctcaattccaaaaagtataatgtttccttc 2677348  T
Q  299 attttatagtgta 311  Q
    ||| |||||||||    
T  2677349 attctatagtgta 2677361  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 24935457 - 24935388
Alignment:
Q  242 tttataagaaatcaccacattttactcgtcaattctaaaaagtataatatttttctcattttatagtgta 311  Q
    ||||||||||||||||||||||||||| ||||||| ||||| |||||| |||   ||||| |||||||||    
T  24935457 tttataagaaatcaccacattttactcctcaattccaaaaattataatctttccatcattctatagtgta 24935388  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 25809788 - 25809869
Alignment:
Q  230 taaattataatgtttataagaaatcaccacattttactcgtcaattctaaaaagtataatatttttctcattttatagtgta 311  Q
    |||||| |||||||||||| |||||| |||||||||||| | ||||| ||||||||||||||||  ||||||||||| ||||    
T  25809788 taaattctaatgtttataaaaaatcatcacattttactccttaattccaaaaagtataatatttccctcattttataatgta 25809869  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 38216776 - 38216866
Alignment:
Q  199 tttttgttgttgttaattctctatattgaactaaattataatgtttataagaaatcaccacattttactcgtcaattctaaaaagtataat 289  Q
    ||||||| ||| ||||||||||| |||| | | |||| ||||| |||||| ||||||||||||||||||| || |||| ||| | ||||||    
T  38216776 tttttgtagttattaattctctagattgtattgaattttaatgcttataacaaatcaccacattttactcctccattccaaagaatataat 38216866  T

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Target: scaffold0026 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 311
Target Start/End: Complemental strand, 92904 - 92816
Alignment:
Q  223 attgaactaaattataatgtttataagaaatcaccacattttactcgtcaattctaaaaagtataatatttttctcattttatagtgta 311  Q
    |||| |||||||| |||||||||||| |||||| || ||||||||| | ||||  ||||||||||||||||  ||||||||||||||||    
T  92904 attgtactaaattctaatgtttataaaaaatcatcatattttactccttaatttcaaaaagtataatatttccctcattttatagtgta 92816  T

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Target: scaffold0369 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 8863 - 8935
Alignment:
Q  237 taatgtttataagaaatcaccacattttactcgtcaattctaaaaagtataatatttttctcattttatagtg 309  Q
    |||||||||||| |||| |||||||||||||| | ||||| || |||||||||||||| |||||| |||||||    
T  8863 taatgtttataacaaattaccacattttactcattaattccaacaagtataatattttcctcattatatagtg 8935  T

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