View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2444_low_4 (Length: 344)
Name: NF2444_low_4
Description: NF2444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2444_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 31536637 - 31536457
Alignment:
| Q |
18 |
cataacaaaaagagataattatgattatggaaaatttatcatcatgatttcttccacaatcccaaagcaacaaaatctactcacatgtcatcataggaga |
117 |
Q |
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| T |
31536637 |
cataacaaaaagagataattatgattatggaaaatttatcatcatgatttcttccacaatcccaaagcaacaaaatctactcacatgtcatcatagtaga |
31536538 |
T |
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| Q |
118 |
tgcatcaaaataatatagaaacacatagaataataacaaataagatgaacgaaaactaacttttattgaaatagaaaagta |
198 |
Q |
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| T |
31536537 |
tgcaccaaaataatatagaaacacatagaacaataacaaataagatgaacgaaaactaacttttattgaaataaaaaagta |
31536457 |
T |
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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 31536308 - 31536255
Alignment:
| Q |
196 |
gtataagaccaagaattaagctcttaaatgtgagactatatgtaaaaatgtgaa |
249 |
Q |
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| T |
31536308 |
gtataagaacaagaattaagctcttaaatgtgagactatatgtaaaaatgtgaa |
31536255 |
T |
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