View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2444_low_6 (Length: 235)

Name: NF2444_low_6
Description: NF2444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2444_low_6
NF2444_low_6
[»] chr5 (4 HSPs)
chr5 (1-221)||(37072966-37073186)
chr5 (143-194)||(41312650-41312701)
chr5 (5-107)||(578318-578417)
chr5 (78-155)||(37135783-37135862)
[»] chr2 (2 HSPs)
chr2 (25-187)||(8420424-8420588)
chr2 (8-192)||(6531386-6531578)
[»] chr1 (1 HSPs)
chr1 (45-181)||(26518651-26518787)
[»] chr4 (3 HSPs)
chr4 (8-182)||(25809890-25810067)
chr4 (25-95)||(42391483-42391554)
chr4 (158-194)||(42391438-42391474)
[»] scaffold0026 (1 HSPs)
scaffold0026 (58-147)||(92676-92765)
[»] chr6 (2 HSPs)
chr6 (5-107)||(6468064-6468168)
chr6 (158-194)||(6468030-6468066)
[»] chr7 (3 HSPs)
chr7 (158-192)||(2677486-2677520)
chr7 (62-102)||(2677442-2677483)
chr7 (157-193)||(24935233-24935269)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37073186 - 37072966
Alignment:
Q  1 tcgatagtatgtttctagatgctttttgataaatgtgttttaaaagaaaataagatatagttgaaactattttgattatgtttagttaagccaaagtttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37073186 tcgatagtatgtttctagatgctttttgataaatgtgttttaatagaaaataagatatagttgaaactattttgattatgtttagttaagccaaagtttg 37073087  T
Q  101 gaggcatacttaattgtttggcaggtatgaaacatacatacatttttactaaaatcacatttgacatgagacatactattaattatagtagtcctgaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37073086 gaggcatacttaattgtttggcaggtatgaaacatacatacatttttactaaaatcacatttgacatgagacatactattaattatagtagtcctgaatt 37072987  T
Q  201 ccttgattggcggaacaaaag 221  Q
    |||||||||||||||||||||    
T  37072986 ccttgattggcggaacaaaag 37072966  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 41312701 - 41312650
Alignment:
Q  143 tttttactaaaatcacatttgacatgagacatactattaattatagtagtcc 194  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  41312701 tttttactaaaatcacatttgacatgggacatactattaattataatagtcc 41312650  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 578417 - 578318
Alignment:
Q  5 tagtatgtttctagatgctt-tttgataaatgtgttttaaaagaaaataagatatagttgaaactattttgattatgtttagttaagccaaagtttggag 103  Q
    ||||||||||||| || | | ||||||||||||||||||  ||||| |||| ||| |||||||||     ||| |||||||||||| |||||||||||||    
T  578417 tagtatgtttctacatacatgtttgataaatgtgttttagtagaaagtaagttatggttgaaactc----gatcatgtttagttaaaccaaagtttggag 578322  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 37135783 - 37135862
Alignment:
Q  78 atgtttagttaagccaaagtttggaggcatacttaatt--gtttggcaggtatgaaacatacatacatttttactaaaat 155  Q
    |||||||||||||||| |||||  ||||| ||| ||||  |||||  || || |||||||||||| ||||||||||||||    
T  37135783 atgtttagttaagccacagtttataggcaaactcaattttgtttgatagttacgaaacatacatatatttttactaaaat 37135862  T

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Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 187
Target Start/End: Complemental strand, 8420588 - 8420424
Alignment:
Q  25 tttgataaatgtgttttaaaagaaaataagatatagttgaaactattttgattatgtttagttaagccaaagtttggaggcatacttaattgtttggcag 124  Q
    ||||||||||||||||||  | ||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||| | |    
T  8420588 tttgataaatgtgttttagtacaaactaagatatggttgaagctattttgatcatgtttagttaagccaaagtttggaggcatactcaattgtttgacgg 8420489  T
Q  125 gtatgaaacatacataca--tttttactaaaatcacatttgacatgagacatactattaattata 187  Q
     || ||||||| |||| |  |||||||||||||||||||||||||||||||||||||||||||||    
T  8420488 ttacgaaacatgcatagatttttttactaaaatcacatttgacatgagacatactattaattata 8420424  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 6531578 - 6531386
Alignment:
Q  8 tatgtttctagatgctt-tttgataaatgtgttttaaaagaaaataagatatagttgaaactattttgattatgtttagttaagccaaagtttgga---- 102  Q
    |||||||||| |||| | |||||||||| |||||||  | ||| |||||||| ||| ||  ||||||||| |||||||||||||||||||||||||        
T  6531578 tatgtttctacatgcatgtttgataaatatgttttagtacaaagtaagatattgtttaagttattttgataatgtttagttaagccaaagtttggacttt 6531479  T
Q  103 ---ggcatacttaattgtttggcaggtatgaaacatacatacatttttactaaaatcacatttgacatgagacatactattaattatagtagt 192  Q
       | ||||||  |||||||| ||  ||  ||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| ||||    
T  6531478 ggagacatactcgattgtttgacaattacaaaacatacatatatttttactaaaatcacatttgacatgagacgttctattaattataatagt 6531386  T

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Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 45 - 181
Target Start/End: Original strand, 26518651 - 26518787
Alignment:
Q  45 agaaaataagatatagttgaaactattttgattatgtttagttaagccaaagtttggaggcatacttaattgtttggcaggtatgaaacatacatacatt 144  Q
    ||||| ||| |||| |||||| |||||||||| |||||||||||||||||||||| |||||||||| ||||||||| ||| || |||||||||||| |||    
T  26518651 agaaagtaacatatggttgaagctattttgatcatgtttagttaagccaaagtttagaggcatactcaattgtttgacagttacgaaacatacatatatt 26518750  T
Q  145 tttactaaaatcacatttgacatgagacatactatta 181  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  26518751 tttactaaaatcacaattgacatgagatatactatta 26518787  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 25809890 - 25810067
Alignment:
Q  8 tatgtttctagatgctt-tttgataaatgtgttttaaaagaaaataagatatagttgaaactattttgattatgtttagttaagccaaagtttggaggca 106  Q
    |||||||||| |||| | ||||||||||||||||||  | ||| ||| || |||||||| |||||||||| |||||||||||| |||||||||||||| |    
T  25809890 tatgtttctacatgcatgtttgataaatgtgttttagtacaaagtaaaatttagttgaagctattttgatcatgtttagttaaaccaaagtttggaggaa 25809989  T
Q  107 tacttaattgtttggcaggtatgaaacatacataca---tttttactaaaatcacatttgacatgagacatactattaa 182  Q
    |||| ||||||||   || || | |||||||||| |   ||||||||||||||||||||||||||||||||||||||||    
T  25809990 tactcaattgtttaagagttaag-aacatacatatattttttttactaaaatcacatttgacatgagacatactattaa 25810067  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 42391554 - 42391483
Alignment:
Q  25 tttgataaatgtgttttaaaagaaaataagatatagttgaaactatttt-gattatgtttagttaagccaaa 95  Q
    ||||| ||||||||||||  | ||| |||| |||||||||| ||||||| |||||||||||||||| |||||    
T  42391554 tttgacaaatgtgttttagtataaagtaagttatagttgaagctattttcgattatgtttagttaaaccaaa 42391483  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 42391474 - 42391438
Alignment:
Q  158 catttgacatgagacatactattaattatagtagtcc 194  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  42391474 catttgacatgagaaatactattaattataatagtcc 42391438  T

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Target: scaffold0026 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 92765 - 92676
Alignment:
Q  58 tagttgaaactattttgattatgtttagttaagccaaagtttggaggcatacttaattgtttggcaggtatgaaacatacatacattttt 147  Q
    |||||||| |||||||||| |||||||||||| |||||||||||||| ||||| ||||||||   || || |||||||||||| ||||||    
T  92765 tagttgaacctattttgatcatgtttagttaaaccaaagtttggaggaatactcaattgtttaagagttaagaaacatacatatattttt 92676  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 6468168 - 6468064
Alignment:
Q  5 tagtatgtttctagatgctt-tttgataaatgtgttttaaaagaaaataagatatagttgaaactattttg-attatgtttagttaagccaaagtttgga 102  Q
    ||||||||||||| |||| | ||||||||||| ||||||  ||||| |||| ||| |||||| |||||||  ||||||||||||||| ||||||| ||||    
T  6468168 tagtatgtttctacatgcatgtttgataaatgagttttagtagaaagtaagttatggttgaagctattttctattatgtttagttaaaccaaagtatgga 6468069  T
Q  103 ggcat 107  Q
    |||||    
T  6468068 ggcat 6468064  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 6468066 - 6468030
Alignment:
Q  158 catttgacatgagacatactattaattatagtagtcc 194  Q
    |||||||||||||||||||||||||||||| ||||||    
T  6468066 catttgacatgagacatactattaattataatagtcc 6468030  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 192
Target Start/End: Original strand, 2677486 - 2677520
Alignment:
Q  158 catttgacatgagacatactattaattatagtagt 192  Q
    |||||||||||||||||||||||||||||| ||||    
T  2677486 catttgacatgagacatactattaattataatagt 2677520  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 2677442 - 2677483
Alignment:
Q  62 tgaaactattttg-attatgtttagttaagccaaagtttgga 102  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  2677442 tgaaactattttggatcatgtttagttaagccaaagtttgga 2677483  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 24935269 - 24935233
Alignment:
Q  157 acatttgacatgagacatactattaattatagtagtc 193  Q
    |||||| |||||||||||||||||||||||| |||||    
T  24935269 acatttcacatgagacatactattaattataatagtc 24935233  T

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