View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2444_low_7 (Length: 208)
Name: NF2444_low_7
Description: NF2444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2444_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 109527 - 109641
Alignment:
| Q |
44 |
tgctgtaaaatatgtaaatttgtgtgtcgataaggaaatcatatatacaccttgtatttataatggttttcctggaaatgtattaaatgtttaaggaata |
143 |
Q |
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| T |
109527 |
tgctgcaaaatatgtaaatttgtgtgtcgataatgaaatcaca----ccccttgtatttataatggtattactgtaaatgtattaaatgtttaaggaata |
109622 |
T |
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| Q |
144 |
agcactagcttagaaagtt |
162 |
Q |
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| T |
109623 |
agcactagcttagaaagtt |
109641 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 28767453 - 28767525
Alignment:
| Q |
90 |
acaccttgtatttataatggttttcctggaaatgtattaaatgtttaaggaataagcactagcttagaaagtt |
162 |
Q |
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| T |
28767453 |
acaccctgtatttataatggttttacaataaatgtattgaatgcttaatgagtaagcactagcctaggaagtt |
28767525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 23221108 - 23221036
Alignment:
| Q |
90 |
acaccttgtatttataatggttttcctggaaatgtattaaatgtttaaggaataagcactagcttagaaagtt |
162 |
Q |
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| T |
23221108 |
acaccttgtatttataatggttttcccgtaagtgcattgaatgcttaattagtaagcactagcataggaagtt |
23221036 |
T |
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