View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2445_high_10 (Length: 398)
Name: NF2445_high_10
Description: NF2445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2445_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 114 - 370
Target Start/End: Complemental strand, 35882262 - 35882006
Alignment:
| Q |
114 |
aatgttgagaaatttaagattgtgaagtggaggaaaatcagaagggaaattaccggttaaagtgttgtttgataaatctaagtagtgaagattgtgtaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35882262 |
aatgttgagaaatttaagattgtgaagtggaggaaaatcagaagggaaattaccagttaaagtgttgtttgataaatctaagtagtgaagattgtgtaaa |
35882163 |
T |
|
| Q |
214 |
gaagaaatgggttttatgttatctttgagattgcagcttgaaagatcaaggtgttgtagtttggtaaggttttgaaaacctaagggaagtgctcttaagt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35882162 |
gaagaaatgggttttatgttatctttgagattgcagcttgaaagatcaaggtgttgtagtttggtaaggttttgaaaacctaagggaagtgctcttaagt |
35882063 |
T |
|
| Q |
314 |
tgttgtgagaaaggtcgaggattttaaggttttggaagctagagagttgagcaacgt |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35882062 |
tgttgtgagaaaggtcgaggattttaaggttttggaagctagagagttgagcaacgt |
35882006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 114 - 370
Target Start/End: Complemental strand, 24456463 - 24456207
Alignment:
| Q |
114 |
aatgttgagaaatttaagattgtgaagtggaggaaaatcagaagggaaattaccggttaaagtgttgtttgataaatctaagtagtgaagattgtgtaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24456463 |
aatgttgagaaatttaagattgtgaagtggaggaaaatcagaagggaaattaccagttaaagtgttgtttgataaatctaagtagtgaagattgtgtaaa |
24456364 |
T |
|
| Q |
214 |
gaagaaatgggttttatgttatctttgagattgcagcttgaaagatcaaggtgttgtagtttggtaaggttttgaaaacctaagggaagtgctcttaagt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24456363 |
gaagaaatgggttttatgttatctttgagattgcagcttgaaagatcaaggtgttgtagtttggtaaggttttgaaaacctaagggaagtgctcttaagt |
24456264 |
T |
|
| Q |
314 |
tgttgtgagaaaggtcgaggattttaaggttttggaagctagagagttgagcaacgt |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24456263 |
tgttgtgagaaaggtcgaggattttaaggttttggaagctagagagttgagcaacgt |
24456207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University